Companilactobacillus kimchii (CCUG 45370, ATCC BAA-131, CIP 107019)

Name: Companilactobacillus kimchii (CCUG 45370, ATCC BAA-131, CIP 107019)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6578

Type strain

Strain Designation MT-1077

Culture col. no. CCUG 45370 ATCC BAA-131 CIP 107019 DSM 13961 JCM 10707 5 more

NCBI tax ID(s) 2801452

Special Collections DSMZ CCUG JCM KCTC CIP

History DSMZ <- JCM <- J.-S. Ahn; MT-1077 JCM <-- J.-S. Ahn MT-1077. CIP <- 2001, JCM, Lactobacillus kimchii <- J.S. Ahn: strain MT-1077

Links

Companilactobacillus kimchii MT-1077 is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from fermented vegetable .

Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 92761

LMG 19822,DSM 13961,JCM 10707,ATCC BAA-131,CIP 107019,CCUG 45370

@ref 20215

Last LPSN update 2026-05-29 08:26:26

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Companilactobacillus

Species Companilactobacillus kimchii

Full scientific name Companilactobacillus kimchii (Yoon et al. 2000) Zheng et al. 2020

Synonyms (1)

Lactobacillus kimchii

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
121567	positive	rod-shaped
125438			92
125438	positive		94.095

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5197	MRS MEDIUM (DSMZ Medium 11)	Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
35118	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
121567	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5197	positive	growth	30
35118	positive	growth	30
56748	positive	growth	30-37
67770	positive	growth	30
121567	positive	growth	10-37
121567	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
56748	anaerobe
121567	facultative anaerobe
125439	obligate aerobe	98.815

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	+	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
121567	17632 ChEBI	nitrate	-	reduction
121567	17632 ChEBI	nitrate	+	respiration
121567	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121567	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
121567	15688 ChEBI	acetoin	+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121567	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121567	catalase	-	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
121567	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121567	ornithine decarboxylase	-	4.1.1.17
121567	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	+		from API zym

Fatty acid profile

Metadata FA analysis

@ref

56748

Fatty acid	Percentage	ECL
C16:0	29.4	16
C18:2 ω6,9c/C18:0 ANTE	24.4	17.724
C18:1 ω9c	13.7	17.769
C19:0 CYCLO ω9c	13.7	18.87
C18:0	13.2	18
C16:1 ω7c	3.4	15.819
C14:0	1.6	14
C17:1 ISO I/C16:0 DMA	0.8	16.481

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121567	-	+	-	-	-	+	+	+	-	-	+	+	-	-	-	+	+	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
5197	-	-	-	-	+	+	+	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-
121567	not determinedn.d.	-	-	-	+	+	+	-	-	-	+/-	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Vegetable (incl. Grains)
#Engineered	#Food production	#Fermented

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5197	fermented vegetable (kimchi)		Republic of Korea	KOR	Asia
56748	Fermented vegetable (Kimchi)
67770	Fermented vegetable (Kimchi)
121567	Food, Fermented vegetable, Kimchi	Taejon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AF183558 (>99% sequence identity) for Companilactobacillus paralimentarius from Microbeatlas

Aquatic Samples	52
Soil Samples	72
Animal Samples	569
Plant Samples	45
Total Samples	738

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5197	1	Risk group (German classification) According to TRBA 466
121567	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM143544v1 assembly for Companilactobacillus kimchii DSM 13961 = JCM 10707	scaffold	GCA_001435445	1423765.4	2700989131	1423765	69.96
67770	ASM219115v1 assembly for Companilactobacillus kimchii KACC 12383	contig	GCA_002191155	83526.5	8017552607	2801452	69.76
67770	ASM131109v1 assembly for Companilactobacillus kimchii DSM 13961 = JCM 10707	contig	GCA_001311095	1423765.3	2728369670	1423765	66.24
66792	L. kimchii assembly for Companilactobacillus kimchii DSM 13961	contig	GCA_009764365	83526.14	8119016615	2801452	55.19
67770	ASM799181v1 assembly for Companilactobacillus paralimentarius NBRC 106466	contig	GCA_007991815	83526.10		83526	44.2

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Lactobacillus paralimentarius gene for 16S rRNA, partial sequence, strain: JCM 10707	AB289188	662		1423765
5197	Lactobacillus kimchii 16S ribosomal RNA gene, partial sequence	AF183558	1522		83526

GC content

@ref	GC-content (mol%)	Method
5197	37.4	high performance liquid chromatography (HPLC)
5197	35	high performance liquid chromatography (HPLC)
67770	35.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM143544v1 assembly for Companilactobacillus kimchii DSM 13961 = JCM 10707
BV-BRC: 1423765.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.82	no
125439	gram_stain	BacteriaNetⓘ	positive	79.26	no
125439	motility	BacteriaNetⓘ	no	64.57	no
125439	spore_formation	BacteriaNetⓘ	no	78.96	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus paralimentarius DSM 13961 = JCM 10707
PATRIC: 1423765.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	94.10	no
125438	anaerobic	anaerobicⓘ	no	84.76	no
125438	spore-forming	spore-formingⓘ	no	89.29	no
125438	aerobic	aerobicⓘ	no	94.41	no
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Lactobacillus kimchii and Lactobacillus bobalius as later subjective synonyms of Lactobacillus paralimentarius.	Pang H, Kitahara M, Tan Z, Wang Y, Qin G, Ohkuma M, Cai Y	Int J Syst Evol Microbiol	10.1099/ijs.0.035329-0	2011
Phylogeny	Lactobacillus versmoldensis sp. nov., isolated from raw fermented sausage.	Krockel L, Schillinger U, Franz CMAP, Bantleon A, Ludwig W	Int J Syst Evol Microbiol	10.1099/ijs.0.02387-0	2003
Phylogeny	Lactobacillus kimchii sp. nov., a new species from kimchi.	Yoon JH, Kang SS, Mheen TI, Ahn JS, Lee HJ, Kim TK, Park CS, Kho YH, Kang KH, Park YH	Int J Syst Evol Microbiol	10.1099/00207713-50-5-1789	2000

References

#5197	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13961
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#35118	; Curators of the CIP;
#56748	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45370
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121567	Collection of Institut Pasteur ; Curators of the CIP; CIP 107019
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Companilactobacillus kimchii (CCUG 45370, ATCC BAA-131, CIP 107019)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Antibiotic resistance

Metabolite tests

Enzymes

Fatty acid profile

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001435445

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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