Name: Companilactobacillus kimchii MT-1077
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6578

Type strain:

Species: Companilactobacillus kimchii

Strain Designation: MT-1077

Culture col. no.: CCUG 45370, ATCC BAA-131, CIP 107019, DSM 13961, JCM 10707, KCTC 8903P, KACC 12383, NBRC 106466, NRIC 0493

Strain history: CIP <- 2001, JCM, Lactobacillus kimchii <- J.S. Ahn: strain MT-1077

NCBI tax ID(s): 2801452 (species)

SI-ID 92761

LMG 19822, DSM 13961, JCM 10707, ATCC BAA-131, CIP 107019, CCUG 45370

Section

Companilactobacillus kimchii MT-1077 is an anaerobe, Gram-positive bacterium that was isolated from fermented vegetable .

Gram-positive
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Companilactobacillus*
	Species	**Companilactobacillus kimchii**
	Full Scientific Name (LPSN)	Companilactobacillus kimchii (Yoon et al. 2000) Zheng et al. 2020

Synonym

Lactobacillus kimchii

Information on morphological and physiological properties Morphology

[Ref.: #121567]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %95.863

[Ref.: #121567]	Cell shape	rod-shaped

[Ref.: #121567]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.336

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5197]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #5197]

Culture medium growth

[Ref.: #5197]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5197]

Culture medium composition

expand / minimize

[Ref.: #35118]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #35118]

Culture medium growth

[Ref.: #35118]

Culture medium composition

expand / minimize

[Ref.: #121567]

Culture medium

CIP Medium 40

[Ref.: #121567]

Culture medium growth

[Ref.: #121567]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5197]		growth	30 °C
[Ref.: #35118]		growth	30 °C
[Ref.: #56748]		growth	30-37 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #121567]		growth	10-37 °C
[Ref.: #121567]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #56748]	Oxygen tolerance	anaerobe
[Ref.: #121567]	Oxygen tolerance	facultative anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %94.141
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #121567]	nitrate ChEBI	-	reduction
[Ref.: #121567]	nitrate ChEBI	+	respiration
[Ref.: #121567]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #121567]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #121567]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121567]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121567]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121567]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121567]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121567]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #56748]

Fatty acid	Percentage	ECL
C16:0	29.4	16
C18:2 ω6,9c/C18:0 ANTE	24.4	17.724
C18:1 ω9c	13.7	17.769
C19:0 CYCLO ω9c	13.7	18.87
C18:0	13.2	18
C16:1 ω7c	3.4	15.819
C14:0	1.6	14
C17:1 ISO I/C16:0 DMA	0.8	16.481

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #5197]	14309	-	-	-	-	+	+	+	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-
[Ref.: #121567]	10800	not determinedn.d.	-	-	-	+	+	+	-	-	-	+/-	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121567]	10002	-	+	-	-	-	+	+	+	-	-	+	+	-	-	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5197]	Sample type/isolated from	fermented vegetable (kimchi)
[Ref.: #5197]	Country	Republic of Korea
[Ref.: #5197]	Country ISO 3 Code	KOR
[Ref.: #5197]	Continent	Asia

[Ref.: #56748]	Sample type/isolated from	Fermented vegetable (Kimchi)

[Ref.: #67770]	Sample type/isolated from	Fermented vegetable (Kimchi)

[Ref.: #121567]	Sample type/isolated from	Food, Fermented vegetable, Kimchi
[Ref.: #121567]	Geographic location (country and/or sea, region)	Taejon
[Ref.: #121567]	Country	Republic of Korea
[Ref.: #121567]	Country ISO 3 Code	KOR
[Ref.: #121567]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Vegetable (incl. Grains)
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF183558 (>99% sequence identity) for Companilactobacillus paralimentarius from Microbeatlas

Aquatic Samples	52
Soil Samples	72
Animal Samples	569
Plant Samples	45
Total Samples	738

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5197]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121567]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5197]	Lactobacillus kimchii 16S ribosomal RNA gene, partial sequence	AF183558	1522	GenBank ENA	83526 tax ID
[Ref.: #20218]	Lactobacillus paralimentarius gene for 16S rRNA, partial sequence, strain: JCM 10707	AB289188	662	GenBank ENA	1423765 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Companilactobacillus kimchii DSM 13961 = JCM 10707	GCA_001435445	scaffold	GenBank ENA	1423765 tax ID
[Ref.: #67770]	Companilactobacillus kimchii DSM 13961 = JCM 10707	GCA_001311095	contig	GenBank ENA	1423765 tax ID
[Ref.: #67770]	Companilactobacillus paralimentarius NBRC 106466	GCA_007991815	contig	GenBank ENA	83526 tax ID
[Ref.: #67770]	Companilactobacillus kimchii KACC 12383	GCA_002191155	contig	GenBank ENA	2801452 tax ID
[Ref.: #66792]	Lactobacillus paralimentarius DSM 13961 = JCM 10707	1423765.3	wgs	PATRIC	1423765 tax ID	*
[Ref.: #66792]	Lactobacillus paralimentarius strain NBRC 106466	83526.10	wgs	PATRIC	83526 tax ID	*

[Ref.: #5197]	GC-content	37.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #5197]	GC-content	35 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	35.1 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Companilactobacillus kimchii DSM 13961 = JCM 10707 DSM 13961 NCBI: GCA_001435445.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus paralimentarius DSM 13961 = JCM 10707 PATRIC: 1423765.4
[Ref.: #69480]	motile	no	95.336	no
[Ref.: #69480]	gram-positive	yes	95.863	no
[Ref.: #69480]	anaerobic	no	84.436	yes
[Ref.: #69480]	halophile	yes	89.559	no
[Ref.: #69480]	spore-forming	no	94.141	no
[Ref.: #69480]	glucose-util	yes	91.322	no
[Ref.: #69480]	thermophile	no	99.797	yes
[Ref.: #69480]	aerobic	no	95.349	no
[Ref.: #69480]	flagellated	no	98.171	no
[Ref.: #69480]	glucose-ferment	yes	89.667	no

Availability in culture collections External links

[Ref.: #5197]

Culture collection no.

CCUG 45370, ATCC BAA-131, CIP 107019, DSM 13961, JCM 10707, KCTC 8903P, KACC 12383, NBRC 106466, NRIC 0493

[Ref.: #76052]

SI-ID 92761

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Lactobacillus kimchii and Lactobacillus bobalius as later subjective synonyms of Lactobacillus paralimentarius.	Pang H, Kitahara M, Tan Z, Wang Y, Qin G, Ohkuma M, Cai Y	Int J Syst Evol Microbiol	10.1099/ijs.0.035329-0	2011	*
Phylogeny	Lactobacillus versmoldensis sp. nov., isolated from raw fermented sausage.	Krockel L, Schillinger U, Franz CMAP, Bantleon A, Ludwig W	Int J Syst Evol Microbiol	10.1099/ijs.0.02387-0	2003	*
Phylogeny	Lactobacillus kimchii sp. nov., a new species from kimchi.	Yoon JH, Kang SS, Mheen TI, Ahn JS, Lee HJ, Kim TK, Park CS, Kho YH, Kang KH, Park YH	Int J Syst Evol Microbiol	10.1099/00207713-50-5-1789	2000	*

References

#5197

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13961

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35118 ; Curators of the CIP;
#56748 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45370

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76052

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92761.1 )

#121567 Collection of Institut Pasteur ; Curators of the CIP; CIP 107019
* These data were automatically processed and therefore are not curated

Change proposal

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Search for species Companilactobacillus kimchii in external resources:
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Companilactobacillus kimchii DSM 13961 = JCM 10707 DSM 13961

Lactobacillus paralimentarius DSM 13961 = JCM 10707

Change proposal

Change proposal