Companilactobacillus paralimentarius (DSM 13238, JCM 10415, CCUG 43349)

Name: Companilactobacillus paralimentarius (DSM 13238, JCM 10415, CCUG 43349)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6577

Type strain

Strain Designation TB 1

Culture col. no. DSM 13238 JCM 10415 CCUG 43349 LMG 19152 TB 1 3 more

NCBI tax ID(s) 83526

Special Collections DSMZ CCUG JCM CIP

History <- JCM <- Y. Cai; TB 1 Y. Cai TB1. CIP <- 2000, JCM <- Y. Cai TB1

Links

Companilactobacillus paralimentarius TB 1 is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from sourdough.

Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13090

LMG 19152,JCM 10415,BCRC:81072,CIP 106794,DSM 13238,NCIMB 13723,CCUG 43349

@ref 20215

Last LPSN update 2026-02-09 11:19:15

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Companilactobacillus

Species Companilactobacillus paralimentarius

Full scientific name Companilactobacillus paralimentarius (Cai et al. 1999) Zheng et al. 2020

Synonyms (1)

Lactobacillus paralimentarius

BacDive ID	Other strains from **Companilactobacillus paralimentarius** (5)	Type strain
161002	C. paralimentarius JCM 10618
161003	C. paralimentarius JCM 10619
161005	C. paralimentarius JCM 10620
161006	C. paralimentarius JCM 10621
161955	C. paralimentarius JCM 17161

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
121565	positive	rod-shaped
125438			93
125438	positive		92.181

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4978	MRS MEDIUM (DSMZ Medium 11)	Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
34372	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
121565	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
4978	positive	growth	30
34372	positive	growth	30
55807	positive	growth	37
67770	positive	growth	30
121565	positive	growth	15-37
121565	negative	growth	10
121565	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
55807	anaerobe
55807	microaerophile
125439	obligate aerobe	96.5

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
121565	17632 ChEBI	nitrate	-	reduction
121565	17632 ChEBI	nitrate	+	respiration
121565	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121565	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
121565	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121565	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121565	catalase	-	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
121565	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121565	ornithine decarboxylase	-	4.1.1.17
121565	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121565	-	-	+	-	-	+	+	+	-	-	+	+	-	-	-	+	+	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
4978	-	-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-
4978	-	-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-
121565	not determinedn.d.	-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Fermented

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4978	sourdough	Japan	Japan	JPN	Asia
55807	Sourdough
67770	Sourdough
121565	Sourdough

Taxonmaps

69479

Global distribution of 16S sequence LC096230 (>99% sequence identity) for Companilactobacillus paralimentarius from Microbeatlas

Aquatic Samples	52
Soil Samples	72
Animal Samples	569
Plant Samples	45
Total Samples	738

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4978	1	Risk group (German classification) According to TRBA 466
121565	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM143498v1 assembly for Companilactobacillus paralimentarius DSM 13238 = JCM 10415	scaffold	GCA_001434985	1122151.5	2700989141	1122151	43.4
66792	ASM976434v1 assembly for Companilactobacillus paralimentarius DSM 13238	contig	GCA_009764345	83526.13	8119019895	83526	40.13
66792	ASM61572v1 assembly for Companilactobacillus paralimentarius DSM 13238 = JCM 10415	contig	GCA_000615725	1122151.3	2585427921	1122151	29.52

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Lactobacillus paralimentarius gene for 16S rRNA, partial sequence, strain: JCM 10415	AB289234	626	83526
20218	Lactobacillus paralimentarius 16S rRNA gene, strain DSM 13238	AJ417500	1563	83526
20218	Lactobacillus paralimentarius 23S rRNA gene and 16S-23S IGS, strain DSM 13238	AJ616014	705	83526
20218	Lactobacillus paralimentarius strain DSM 13238 16S-23S ribosomal RNA large intergenic spacer, tRNA-Ile, and tRNA-Ala genes, complete sequence	AY839296	437	83526
20218	Lactobacillus paralimentarius strain DSM 13238 16S-23S ribosomal RNA small intergenic spacer, complete sequence	AY839297	238	83526
4978	Lactobacillus paralimentarius gene for 16S rRNA, partial sequence	AB018528	1476	83526
67770	Lactobacillus paralimentarius gene for 16S ribosomal RNA, partial sequence, strain: JCM 10415	LC096230	1506	83526
124043	Lactobacillus paralimentarius gene for 16S rRNA, partial sequence, strain: NBRC 107152.	AB626066	1492	83526

GC content

@ref	GC-content (mol%)	Method
4978	37.3	high performance liquid chromatography (HPLC)
4978	37.4	high performance liquid chromatography (HPLC)
67770	35.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Companilactobacillus paralimentarius DSM 13238 = JCM 10415
NCBI: GCA_001434985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.50	no
125439	gram_stain	BacteriaNetⓘ	positive	89.40	no
125439	motility	BacteriaNetⓘ	no	67.20	no
125439	spore_formation	BacteriaNetⓘ	no	82.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus paralimentarius DSM 13238 = JCM 10415
PATRIC: 1122151.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.18	no
125438	anaerobic	anaerobicⓘ	no	83.83	no
125438	spore-forming	spore-formingⓘ	no	87.48	no
125438	aerobic	aerobicⓘ	no	94.72	yes
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Lactic acid bacteria strains selected from fermented total mixed rations improve ensiling and in vitro rumen fermentation characteristics of corn stover silage.	Huang K, Chen H, Liu Y, Hong Q, Yang B, Wang J	Anim Biosci	10.5713/ab.21.0461	2022
Phylogeny	Reclassification of Lactobacillus kimchii and Lactobacillus bobalius as later subjective synonyms of Lactobacillus paralimentarius.	Pang H, Kitahara M, Tan Z, Wang Y, Qin G, Ohkuma M, Cai Y	Int J Syst Evol Microbiol	10.1099/ijs.0.035329-0	2011
Phylogeny	Lactobacillus versmoldensis sp. nov., isolated from raw fermented sausage.	Krockel L, Schillinger U, Franz CMAP, Bantleon A, Ludwig W	Int J Syst Evol Microbiol	10.1099/ijs.0.02387-0	2003
Phylogeny	Lactobacillus paralimentarius sp. nov., isolated from sourdough.	Cai Y, Okada H, Mori H, Benno Y, Nakase T	Int J Syst Bacteriol	10.1099/00207713-49-4-1451	1999

References

#4978	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13238
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34372	; Curators of the CIP;
#55807	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 43349
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121565	Collection of Institut Pasteur ; Curators of the CIP; CIP 106794
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Companilactobacillus paralimentarius (DSM 13238, JCM 10415, CCUG 43349)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Antibiotic resistance

Metabolite tests

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001434985

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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