Name: Companilactobacillus paralimentarius TB 1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6577

Type strain:

Species: Companilactobacillus paralimentarius

Strain Designation: TB 1

Culture col. no.: DSM 13238, JCM 10415, CCUG 43349, LMG 19152, CIP 106794, NBRC 107152, NCIMB 13723

Strain history: CIP <- 2000, JCM <- Y. Cai TB1

NCBI tax ID(s): 83526 (species)

SI-ID 13090

LMG 19152, JCM 10415, CIP 106794, DSM 13238, NCIMB 13723, CCUG 43349

Special Collections

Other strains from Companilactobacillus paralimentarius

Section

Companilactobacillus paralimentarius TB 1 is an anaerobe, Gram-positive bacterium that was isolated from sourdough.

Gram-positive
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Companilactobacillus*
	Species	**Companilactobacillus paralimentarius**
	Full Scientific Name (LPSN)	Companilactobacillus paralimentarius (Cai et al. 1999) Zheng et al. 2020

Synonym

Lactobacillus paralimentarius

Information on morphological and physiological properties Morphology

[Ref.: #121565]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %92.181

[Ref.: #121565]	Cell shape	rod-shaped

[Ref.: #121565]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4978]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #4978]

Culture medium growth

[Ref.: #4978]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4978]

Culture medium composition

expand / minimize

[Ref.: #34372]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #34372]

Culture medium growth

[Ref.: #34372]

Culture medium composition

expand / minimize

[Ref.: #121565]

Culture medium

CIP Medium 40

[Ref.: #121565]

Culture medium growth

[Ref.: #121565]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4978]		growth	30 °C
[Ref.: #34372]		growth	30 °C
[Ref.: #55807]		growth	37 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #121565]		growth	15-37 °C
[Ref.: #121565]	no	growth	10 °C
[Ref.: #121565]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #55807]	Oxygen tolerance	anaerobe
[Ref.: #55807]	Oxygen tolerance	microaerophile

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #121565]	nitrate ChEBI	-	reduction
[Ref.: #121565]	nitrate ChEBI	+	respiration
[Ref.: #121565]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #121565]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #121565]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121565]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121565]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121565]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121565]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121565]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #4978]	14938	-	-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-
[Ref.: #4978]	14296	-	-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-
[Ref.: #121565]	10724	not determinedn.d.	-	-	-	-	+	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121565]	9815	-	-	+	-	-	+	+	+	-	-	+	+	-	-	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4978]	Sample type/isolated from	sourdough
[Ref.: #4978]	Geographic location (country and/or sea, region)	Japan
[Ref.: #4978]	Country	Japan
[Ref.: #4978]	Country ISO 3 Code	JPN
[Ref.: #4978]	Continent	Asia

[Ref.: #55807]	Sample type/isolated from	Sourdough

[Ref.: #67770]	Sample type/isolated from	Sourdough

[Ref.: #121565]	Sample type/isolated from	Sourdough
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC096230 (>99% sequence identity) for Companilactobacillus paralimentarius from Microbeatlas

Aquatic Samples	52
Soil Samples	72
Animal Samples	569
Plant Samples	45
Total Samples	738

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4978]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121565]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4978]	Lactobacillus paralimentarius gene for 16S rRNA, partial sequence	AB018528	1476	GenBank ENA	83526 tax ID
[Ref.: #67770]	Lactobacillus paralimentarius gene for 16S ribosomal RNA, partial sequence, strain: JCM 10415	LC096230	1506	GenBank ENA	83526 tax ID
[Ref.: #20218]	Lactobacillus paralimentarius strain DSM 13238 16S-23S ribosomal RNA large intergenic spacer, tRNA-Ile, and tRNA-Ala genes, complete sequence	AY839296	437	GenBank ENA	83526 tax ID	*
[Ref.: #20218]	Lactobacillus paralimentarius strain DSM 13238 16S-23S ribosomal RNA small intergenic spacer, complete sequence	AY839297	238	GenBank ENA	83526 tax ID	*
[Ref.: #20218]	Lactobacillus paralimentarius 23S rRNA gene and 16S-23S IGS, strain DSM 13238	AJ616014	705	GenBank ENA	83526 tax ID	*
[Ref.: #124043]	Lactobacillus paralimentarius gene for 16S rRNA, partial sequence, strain: NBRC 107152.	AB626066	1492	GenBank ENA	83526 tax ID	*
[Ref.: #20218]	Lactobacillus paralimentarius gene for 16S rRNA, partial sequence, strain: JCM 10415	AB289234	626	GenBank ENA	83526 tax ID	*
[Ref.: #20218]	Lactobacillus paralimentarius 16S rRNA gene, strain DSM 13238	AJ417500	1563	GenBank ENA	83526 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Companilactobacillus paralimentarius DSM 13238 = JCM 10415	GCA_001434985	scaffold	GenBank ENA	1122151 tax ID
[Ref.: #66792]	Companilactobacillus paralimentarius DSM 13238 = JCM 10415	GCA_000615725	contig	GenBank ENA	1122151 tax ID	*
[Ref.: #66792]	Companilactobacillus paralimentarius DSM 13238	GCA_009764345	contig	GenBank ENA	83526 tax ID	*
[Ref.: #66792]	Lactobacillus paralimentarius DSM 13238 = JCM 10415	1122151.5	wgs	PATRIC	1122151 tax ID	*
[Ref.: #66792]	Lactobacillus paralimentarius DSM 13238 = JCM 10415	1122151.3	wgs	PATRIC	1122151 tax ID	*
[Ref.: #66792]	Lactobacillus paralimentarius strain DSM 13238	83526.13	wgs	PATRIC	83526 tax ID	*

[Ref.: #4978]	GC-content	37.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #4978]	GC-content	37.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	35.1 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus paralimentarius DSM 13238 = JCM 10415 PATRIC: 1122151.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.181	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	83.829	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.48	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	94.719	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93	no

Availability in culture collections External links

[Ref.: #4978]

Culture collection no.

DSM 13238, JCM 10415, CCUG 43349, LMG 19152, CIP 106794, NBRC 107152, NCIMB 13723

[Ref.: #76051]

SI-ID 13090

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Lactobacillus kimchii and Lactobacillus bobalius as later subjective synonyms of Lactobacillus paralimentarius.	Pang H, Kitahara M, Tan Z, Wang Y, Qin G, Ohkuma M, Cai Y	Int J Syst Evol Microbiol	10.1099/ijs.0.035329-0	2011	*
Phylogeny	Lactobacillus versmoldensis sp. nov., isolated from raw fermented sausage.	Krockel L, Schillinger U, Franz CMAP, Bantleon A, Ludwig W	Int J Syst Evol Microbiol	10.1099/ijs.0.02387-0	2003	*
Phylogeny	Lactobacillus paralimentarius sp. nov., isolated from sourdough.	Cai Y, Okada H, Mori H, Benno Y, Nakase T	Int J Syst Bacteriol	10.1099/00207713-49-4-1451	1999	*
	Lactic acid bacteria strains selected from fermented total mixed rations improve ensiling and in vitro rumen fermentation characteristics of corn stover silage.	Huang K, Chen H, Liu Y, Hong Q, Yang B, Wang J	Anim Biosci	10.5713/ab.21.0461	2022	*

References

#4978

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13238

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34372 ; Curators of the CIP;
#55807 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 43349

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76051

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13090.1 )

#121565 Collection of Institut Pasteur ; Curators of the CIP; CIP 106794

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

Change proposal

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Lactobacillus paralimentarius DSM 13238 = JCM 10415

Change proposal

Change proposal