Name: Lactobacillus parakefiri 1731
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6567

Type strain:

Species: Lactobacillus parakefiri

Strain Designation: 1731

Culture col. no.: CCUG 39468, GCL 1731, ATCC 51648, DSM 10551, IFO 15890, JCM 8573, NBRC 15890, CGMCC 1.3400, CIP 104242, KCTC 5044, KCTC 5087, LMG 15133, NCIMB 13300, JCM 8753

Strain history: CIP <- 1994, JCM, Lactobacillus parakefir <- GCL: strain 1731

NCBI tax ID(s): 1423787 (strain), 152332 (species)

SI-ID 13941

LMG 15133, CIP 104242, IFO 15890, JCM 8573, ATCC 51648, CCUG 39468, DSM 10551, NCIMB 13300, NBRC 15890, KCTC 5044, KCTC 5087

Special Collections

Section

When using BacDive for research please cite our paper

Lactobacillus parakefiri 1731 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from kefir grain.

Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactobacillus*
	Species	Lactobacillus parakefiri
	Full Scientific Name (LPSN)	Lactobacillus parakefiri corrig. Takizawa et al. 1994

	Synonym	Lactobacillus parakefir
	Synonym	**Lentilactobacillus parakefiri**

Information on morphological and physiological properties Morphology

[Ref.: #121564]	Gram stain	positive
[Ref.: #125438]	Gram stain	positive Confidence in %94.411
[Ref.: #125439]	Gram stain	negative Confidence in %92.6

[Ref.: #121564]	Cell shape	rod-shaped

[Ref.: #121564]	Motility	no

[Ref.: #54806]

Incubation period

3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3924]

Culture medium

R - CW MEDIUM (DSMZ Medium 775)

[Ref.: #3924]

Culture medium growth

[Ref.: #3924]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3924]

Culture medium composition

expand / minimize

[Ref.: #41060]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #41060]

Culture medium growth

[Ref.: #41060]

Culture medium composition

expand / minimize

[Ref.: #121564]

Culture medium

CIP Medium 40

[Ref.: #121564]

Culture medium growth

[Ref.: #121564]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3924]		growth	30 °C
[Ref.: #41060]		growth	30 °C
[Ref.: #54806]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #121564]		growth	15-37 °C
[Ref.: #121564]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3924]	Oxygen tolerance	anaerobe
[Ref.: #54806]	Oxygen tolerance	anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %96.1

[Ref.: #125439]

Ability of spore formation

no Confidence in %97.5

[Ref.: #3924]	Murein short key	A11.31
[Ref.: #3924]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #121564]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #121564]	nitrate ChEBI	-	reduction
[Ref.: #121564]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #121564]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #121564]	catalase	-	1.11.1.6
[Ref.: #121564]	lysine decarboxylase	+	4.1.1.18
[Ref.: #121564]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121564]	oxidase	-

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #121564]	9547	not determinedn.d.	-	-	-	+	+	-	-	-	-	+/-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+/-	+/-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3924]	Sample type/isolated from	kefir grain
[Ref.: #3924]	Country	Denmark
[Ref.: #3924]	Country ISO 3 Code	DNK
[Ref.: #3924]	Continent	Europe

[Ref.: #54806]	Sample type/isolated from	Kefir grains from E.C.Hansen's lab.,Copenhagen,DK
[Ref.: #54806]	Country	Denmark
[Ref.: #54806]	Country ISO 3 Code	DNK
[Ref.: #54806]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Kefir grains

[Ref.: #121564]	Sample type/isolated from	Plant, Kefir grains
[Ref.: #121564]	Geographic location (country and/or sea, region)	Copenhagen
[Ref.: #121564]	Country	Denmark
[Ref.: #121564]	Country ISO 3 Code	DNK
[Ref.: #121564]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC096211 (>99% sequence identity) for Lentilactobacillus from Microbeatlas

Aquatic Samples	432
Soil Samples	442
Animal Samples	3255
Plant Samples	396
Total Samples	4525

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3924]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121564]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus parakefiri gene for 16S ribosomal RNA, partial sequence, strain: JCM 8573	LC096211	1514	GenBank ENA	152332 tax ID
[Ref.: #20218]	Lactobacillus parakefiri gene for 16S rRNA, partial sequence, strain: JCM 8573	AB289232	610	GenBank ENA	152332 tax ID	*
[Ref.: #20218]	Lactobacillus parakefiri gene for 16S ribosomal RNA, partial sequence, strain: JCM 8573	AB370879	1497	GenBank ENA	152332 tax ID	*
[Ref.: #20218]	Lentilactobacillus parakefiri gene for 16S rRNA, partial sequence, strain: YIT 10382	AB429373	1533	GenBank ENA	152332 tax ID	*
[Ref.: #20218]	Lactobacillus parakefiri 16S ribosomal RNA gene, partial sequence	AY026750	1396	GenBank ENA	152332 tax ID	*
[Ref.: #20218]	Lactobacillus parakefiri gene for 16S rRNA, partial sequence, strain: NBRC 15890	AB680991	1500	GenBank ENA	152332 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lentilactobacillus parakefiri JCM 8573	GCA_002157585	scaffold	GenBank ENA	152332 tax ID
[Ref.: #67770]	Lentilactobacillus parakefiri DSM 10551	GCA_004354625	scaffold	GenBank ENA	152332 tax ID
[Ref.: #67770]	Lentilactobacillus parakefiri DSM 10551	GCA_001434215	scaffold	GenBank ENA	1423787 tax ID
[Ref.: #66792]	Lactobacillus parakefiri strain JCM 8573	152332.3	wgs	PATRIC	152332 tax ID	*
[Ref.: #66792]	Lentilactobacillus parakefiri DSM 10551	2660238146	draft	JGI IMG/M	1423787 tax ID	*
[Ref.: #66792]	Lactobacillus parakefiri JCM 8573	2916479636	draft	JGI IMG/M	152332 tax ID	*

[Ref.: #3924]	GC-content	42 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	42.6 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus parakefiri DSM 10551 PATRIC: 1423787.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	94.411	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	75.247	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	82.632	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	85.879	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.987	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	88.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lentilactobacillus parakefiri DSM 10551 NCBI: GCA_001434215
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	97.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	64
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	92.6
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	96.1

Availability in culture collections External links

[Ref.: #3924]

Culture collection no.

CCUG 39468, GCL 1731, ATCC 51648, DSM 10551, IFO 15890, JCM 8573, NBRC 15890, CGMCC 1.3400, CIP 104242, KCTC 5044, KCTC 5087, LMG 15133, NCIMB 13300, JCM 8753

[Ref.: #76041]

SI-ID 13941

Literature:

	Title	Authors	Journal	DOI	Year
	Genomic characterization reconfirms the taxonomic status of Lactobacillus parakefiri.	Tanizawa Y, Kobayashi H, Kaminuma E, Sakamoto M, Ohkuma M, Nakamura Y, Arita M, Tohno M	Biosci Microbiota Food Health	10.12938/bmfh.16-026	2017	*

References

#3924

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10551

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41060 ; Curators of the CIP;
#54806 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 39468

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76041

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13941.1 )

#121564 Collection of Institut Pasteur ; Curators of the CIP; CIP 104242

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Lactobacillus parakefiri DSM 10551

Lentilactobacillus parakefiri DSM 10551

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