Name: Limosilactobacillus vaginalis Lac 19
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6558

Type strain:

Species: Limosilactobacillus vaginalis

Strain Designation: Lac 19

Culture col. no.: DSM 5837, ATCC 49540, NCTC 12197, CCUG 31452, JCM 9505, BCRC 14735, CECT 4089, CIP 105932, KCTC 3515, LMG 12891, NCFB 2810, NCIMB 702810, CSCC 5252

Strain history: CIP <- 1999, C. Phillips, AFISC, Highett, Australia: strain CSCC 5252 <- LMG <- 1992, ATCC <- NCTC

NCBI tax ID(s): 1633 (species)

SI-ID 277603

LMG 12891, ATCC 49540, NCTC 12197, CCUG 31452, NCDO 2810, CIP 105932, JCM 9505, NCIMB 702810, NCFB2810, CECT 4089, CCRC 14735, KCTC 3515, KCTC 3551, KCTC 3699, BCRC 14735, DSM 5837

Special Collections

Other strains from Limosilactobacillus vaginalis

Section

When using BacDive for research please cite our paper

Limosilactobacillus vaginalis Lac 19 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from vaginal swab from patient with trichomoniasis.

Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Limosilactobacillus*
	Species	**Limosilactobacillus vaginalis**
	Full Scientific Name (LPSN)	Limosilactobacillus vaginalis (Embley et al. 1989) Zheng et al. 2020

Synonym

Lactobacillus vaginalis

Information on morphological and physiological properties Morphology

[Ref.: #123782]	Gram stain	positive
[Ref.: #125438]	Gram stain	positive Confidence in %95.062

[Ref.: #123782]	Cell shape	rod-shaped

[Ref.: #123782]	Motility	no
[Ref.: #125438]	Motility	no Confidence in %91

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2334]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #2334]

Culture medium growth

[Ref.: #2334]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2334]

Culture medium composition

expand / minimize

[Ref.: #38591]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #38591]

Culture medium growth

[Ref.: #38591]

Culture medium composition

expand / minimize

[Ref.: #123782]

Culture medium

CIP Medium 40

[Ref.: #123782]

Culture medium growth

[Ref.: #123782]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #2334]		growth	37 °C
[Ref.: #38591]		growth	37 °C
[Ref.: #50607]		growth	37 °C
[Ref.: #50607]		growth	37-42 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #123782]		growth	30-45 °C
[Ref.: #123782]	negative	growth	10 °C
[Ref.: #123782]	negative	growth	15 °C
[Ref.: #123782]	negative	growth	22 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #50607]	Oxygen tolerance	anaerobe
[Ref.: #50607]	Oxygen tolerance	microaerophile
[Ref.: #123782]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	microaerophile Confidence in %97

[Ref.: #125438]

Ability of spore formation

no Confidence in %92.017

[Ref.: #2334]	Murein short key	A21.04
[Ref.: #2334]	Murein types	A4ß L-Orn-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68377]	D-fructose ChEBI	+	builds acid from	* from API NH, API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH, API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68377]	maltose ChEBI	+	builds acid from	* from API NH, API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123782]	nitrate ChEBI	-	reduction
[Ref.: #123782]	nitrate ChEBI	+	respiration
[Ref.: #123782]	nitrite ChEBI	-	reduction
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68377]	sucrose ChEBI	-	builds acid from	* from API NH
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68377]	urea ChEBI	-	hydrolysis	* from API NH
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68377]		indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #123782]		acetoin ChEBI	-
[Ref.: #68377]		indole ChEBI		-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123782]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API NH
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68377]	beta-galactosidase	-	3.2.1.23	* from API NH
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68377]	beta-lactamase	-	3.5.2.6	* from API NH
[Ref.: #123782]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68377]	gamma-glutamyltransferase	-	2.3.2.2	* from API NH
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68377]	lipase	+		* from API NH
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123782]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123782]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #123782]	oxidase	-
[Ref.: #68377]	proline-arylamidase	-	3.4.11.5	* from API NH
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #68377]	urease	-	3.5.1.5	* from API NH
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #50607]

Fatty acid	Percentage	ECL
C18:1 ω9c	33.3	17.769
C16:0	23.7	16
C19:0 CYCLO ω9c	15.7	18.87
C18:1 ω7c /12t/9t	15.5	17.824
C14:0	7.4	14
C16:1 ω7c	4.4	15.819

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #2334]	15044	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #2334]	15043	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #2334]	15042	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #50607]	1431	-	+	+	+	-	-	-	+	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123782]	9104	-	-	+	+	-	+	-	-	-	-	+	+	+	+	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2334]	Sample type/isolated from	vaginal swab from patient with trichomoniasis

[Ref.: #50607]	Sample type/isolated from	Human vagina,patient with trichomoniasis

[Ref.: #67770]	Sample type/isolated from	Vagina of patients suffering from trichomonaiasis

[Ref.: #123782]	Sample type/isolated from	Human, Vagina
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Infection	#Patient	-
#Infection	#Patient	#Swab
#Host Body-Site	#Urogenital tract	#Vagina

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC096217 (>99% sequence identity) for Limosilactobacillus from Microbeatlas

Aquatic Samples	719
Soil Samples	1438
Animal Samples	55246
Plant Samples	398
Total Samples	57801

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2334]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123782]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus vaginalis gene for 16S ribosomal RNA, partial sequence, strain: JCM 9505	LC096217	1513	GenBank ENA	1633 tax ID
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243141	1505	GenBank ENA	47770 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243142	1521	GenBank ENA	1596 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243143	1502	GenBank ENA	109790 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243144	1521	GenBank ENA	1596 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243145	1524	GenBank ENA	97478 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243146	1517	GenBank ENA	47715 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243147	1518	GenBank ENA	47714 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243148	1524	GenBank ENA	97478 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243149	1525	GenBank ENA	1613 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243150	1508	GenBank ENA	47770 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243151	1521	GenBank ENA	1596 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243152	1509	GenBank ENA	47770 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243153	1513	GenBank ENA	109790 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243154	1523	GenBank ENA	1633 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243155	1511	GenBank ENA	109790 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243156	1509	GenBank ENA	1596 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243157	1508	GenBank ENA	1596 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243158	1510	GenBank ENA	47770 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243159	1511	GenBank ENA	109790 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243160	1509	GenBank ENA	120548 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243161	1512	GenBank ENA	109790 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243162	1512	GenBank ENA	109790 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243163	1502	GenBank ENA	120549 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243164	1511	GenBank ENA	120476 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243165	1522	GenBank ENA	1596 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243166	1525	GenBank ENA	1613 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243167	1497	GenBank ENA	47770 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243168	1513	GenBank ENA	47714 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243169	1512	GenBank ENA	47770 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243170	1508	GenBank ENA	47770 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243171	1510	GenBank ENA	47770 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243172	1509	GenBank ENA	47770 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243173	1518	GenBank ENA	1596 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243174	1509	GenBank ENA	47770 tax ID	*
[Ref.: #124043]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence.	AF243175	1513	GenBank ENA	47770 tax ID	*
[Ref.: #20218]	Lactobacillus vaginalis strain ATCC49540 16S ribosomal RNA gene, partial sequence	AF243177	1541	GenBank ENA	1633 tax ID	*
[Ref.: #20218]	Lactobacillus vaginalis strain DSM 5837 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence	EU161598	796	GenBank ENA	1633 tax ID	*
[Ref.: #20218]	Lactobacillus vaginalis gene for 16S rRNA, partial sequence, strain: JCM 9505	AB289311	648	GenBank ENA	1633 tax ID	*
[Ref.: #20218]	Lactobacillus vaginalis 16S ribosomal RNA, partial sequence; 16S/23S intergenic spacer region, complete sequence; and 23S ribosomal RNA partial sequence	AF182731	672	GenBank ENA	1633 tax ID	*
[Ref.: #20218]	L.vaginalis 16S rRNA gene	X61136	1488	GenBank ENA	1633 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Limosilactobacillus vaginalis DSM 5837 = ATCC 49540	GCA_001435915	scaffold	GenBank ENA	1423814 tax ID
[Ref.: #67770]	Limosilactobacillus vaginalis DSM 5837 = ATCC 49540	GCA_000159435	scaffold	GenBank ENA	1423814 tax ID
[Ref.: #66792]	Lactobacillus vaginalis ATCC 49540	525366.3	wgs	PATRIC	1423814 tax ID	*
[Ref.: #66792]	Lactobacillus vaginalis DSM 5837 = ATCC 49540	1423814.6	wgs	PATRIC	1423814 tax ID	*
[Ref.: #66792]	Lactobacillus vaginalis DSM 5837 = ATCC 49540 strain SRR9217392-mag-bin.4	1423814.24	wgs	PATRIC	1423814 tax ID	*
[Ref.: #66792]	Limosilactobacillus vaginalis ATCC 49540	643886050	draft	JGI IMG/M	1423814 tax ID	*

[Ref.: #2334]	GC-content	39.0 mol%
[Ref.: #67770]	GC-content	40.5 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	39 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus vaginalis ATCC 49540 PATRIC: 525366.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	95.062	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	76.768	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	92.017	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	93.627	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.875	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	91	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Limosilactobacillus vaginalis DSM 5837 = ATCC 49540 NCBI: GCA_000159435
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	83.8
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	69
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	66.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	microaerophile	97

Availability in culture collections External links

[Ref.: #2334]

Culture collection no.

DSM 5837, ATCC 49540, NCTC 12197, CCUG 31452, JCM 9505, BCRC 14735, CECT 4089, CIP 105932, KCTC 3515, LMG 12891, NCFB 2810, NCIMB 702810, CSCC 5252

[Ref.: #76029]

SI-ID 277603

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Limosilactobacillus urinaemulieris sp. nov. and Limosilactobacillus portuensis sp. nov. isolated from urine of healthy women.	Ksiezarek M, Ribeiro TG, Rocha J, Grosso F, Perovic SU, Peixe L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004726	2021	*
Phylogeny	The genome of the Lactobacillus sanfranciscensis temperate phage EV3.	Ehrmann MA, Angelov A, Picozzi C, Foschino R, Vogel RF	BMC Res Notes	10.1186/1756-0500-6-514	2013	*

References

#2334

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5837

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38591 ; Curators of the CIP;
#50607 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 31452

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68377

Automatically annotated from API NH .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76029

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID277603.1 )

#123782 Collection of Institut Pasteur ; Curators of the CIP; CIP 105932

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Lactobacillus vaginalis ATCC 49540

Limosilactobacillus vaginalis DSM 5837 = ATCC 49540

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