Name: Lacticaseibacillus paracasei subsp. paracasei 40
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6552

Type strain:

Species: Lacticaseibacillus paracasei subsp. paracasei

Strain Designation: 40

Culture col. no.: DSM 20008, ATCC 25598, NCDO 2743, NCIB 9713, CCUG 34678, JCM 1181, BCRC 12193, CIP 102993, NCIMB 9713

Strain history: CIP <- 1987, DSM <- I.G. Abo-Elnaga: strain 40, Lactobacillus casei subsp. pseudoplantarum

NCBI tax ID(s): 47714 (subspecies)

SI-ID 3334

LMG 9192, ATCC 25598, DSM 20008, JCM 1181, NCFB 2743, NCIMB 9713, NCDO 2743, NCIB 9713, CCUG 34678, CIP 102993, CCRC 12193, NCIMB 8835, CECT 277, CECT 4130, BCRC 12193, NRRL B-4560

Special Collections

Other strains from Lacticaseibacillus paracasei subsp. paracasei

Section

When using BacDive for research please cite our paper

Lacticaseibacillus paracasei subsp. paracasei 40 is a mesophilic bacterium that was isolated from milking machine.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lacticaseibacillus*
	Species	**Lacticaseibacillus paracasei subsp. paracasei**
	Full Scientific Name (LPSN)	Lacticaseibacillus paracasei subsp. paracasei (Collins et al. 1989) Zheng et al. 2020

Synonym

Lactobacillus paracasei subsp. paracasei

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8423]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #8423]

Culture medium growth

[Ref.: #8423]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8423]

Culture medium composition

expand / minimize

[Ref.: #35467]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #35467]

Culture medium growth

[Ref.: #35467]

Culture medium composition

expand / minimize

[Ref.: #117200]

Culture medium

CIP Medium 40

[Ref.: #117200]

Culture medium growth

[Ref.: #117200]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8423]	growth	30 °C
[Ref.: #35467]	growth	30 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8423]

Name of produced compound

lactic acid racemase

[Ref.: #8423]	Murein short key	A11.31
[Ref.: #8423]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8423]	15227	-	-	-	-	-	+	-	-	-	-	+	+	+	+	+	-	-	-	+	+	-	-	+	+	+	+	+	+	+	+	-	+	+	+	+	-	-	-	-	+	+	-	+	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8423]	Sample type/isolated from	milking machine

[Ref.: #52247]	Sample type/isolated from	Milking machine

[Ref.: #67770]	Sample type/isolated from	Milking machine

[Ref.: #117200]	Sample type/isolated from	Other, Milking machine
* marker position based on {}

Isolation sources categories

#Engineered

#Industrial

#Engineered product

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D16549 (>99% sequence identity) for Lactobacillaceae from Microbeatlas

Aquatic Samples	2397
Soil Samples	1801
Animal Samples	39363
Plant Samples	883
Total Samples	44444

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8423]	Pathogenicity (human)	yes, in single cases
[Ref.: #8423]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117200]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus casei gene for 16S rRNA	D16549	1521	GenBank ENA	47714 tax ID
[Ref.: #124043]	Lactobacillus paracasei subsp. paracasei genes for 16S rRNA, 16S-23S internal transcribed spacer, tRNA-Ile, tRNA-Ala, 23S rRNA, partial and complete sequence, strain:JCM 1181.	AB237510	572	GenBank ENA	47714 tax ID	*
[Ref.: #124043]	Lactobacillus paracasei subsp. paracasei genes for 16S rRNA, 16S-23S internal transcribed spacer, 23S rRNA, partial sequence, strain:JCM 1181.	AB237511	364	GenBank ENA	47714 tax ID	*
[Ref.: #124043]	Lactobacillus paracasei subsp. paracasei strain BCRC12193 16S ribosomal RNA gene, complete sequence.	AY773951	1486	GenBank ENA	47714 tax ID	*
[Ref.: #20218]	Lactobacillus casei ATCC 25598 16S ribosomal RNA gene, partial sequence	AF429520	507	GenBank ENA	1582 tax ID	*
[Ref.: #20218]	Lactobacillus casei strain ATCC 25598 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF429607	538	GenBank ENA	1582 tax ID	*
[Ref.: #124043]	Lactobacillus paracasei subsp. paracasei gene for 16S rRNA, partial sequence, strain: JCM 1181.	AB289220	665	GenBank ENA	47714 tax ID	*
[Ref.: #124043]	Lactobacillus paracasei subsp. paracasei 16S ribosomal RNA, partial sequence; 16S/23S intergenic spacer region, complete sequence; and 23S ribosomal RNA partial sequence	AF182724	685	GenBank ENA	47714 tax ID	*

[Ref.: #8423]

GC-content

44.9 mol%

Availability in culture collections External links

[Ref.: #8423]

Culture collection no.

DSM 20008, ATCC 25598, NCDO 2743, NCIB 9713, CCUG 34678, JCM 1181, BCRC 12193, CIP 102993, NCIMB 9713

[Ref.: #76023]

SI-ID 3334

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Applied development of crude enzyme from Bacillus cereus in prebiotics and microbial community changes in soil.	Liang TW, Liu CP, Wu C, Wang SL	Carbohydr Polym	10.1016/j.carbpol.2012.11.097	2012	*
Metabolism	Effects of bile salt deconjugation by probiotic strains on the survival of antibiotic-resistant foodborne pathogens under simulated gastric conditions.	He X, Zou Y, Cho Y, Ahn J	J Food Prot	10.4315/0362-028X.JFP-11-456	2012	*

References

#8423

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20008

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35467 ; Curators of the CIP;
#52247 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 34678
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76023

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3334.1 )

#117200 Collection of Institut Pasteur ; Curators of the CIP; CIP 102993

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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