[Ref.: #8789] |
Sample type/isolated from |
bovine rumen |
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[Ref.: #54804] |
Sample type/isolated from |
Bovine rumen |
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[Ref.: #67770] |
Sample type/isolated from |
Bovine rumen |
|
[Ref.: #122313] |
Sample type/isolated from |
Animal, Cattle, rumen |
* marker position based on {}
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Isolation sources categories |
#Host |
#Mammals |
#Bovinae (Cow, Cattle) |
#Host Body-Site |
#Organ |
#Rumen |
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Information on genomic background e.g. entries in nucleic sequence databass
Sequence information
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16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
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Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
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[Ref.: #67770] |
Lactobacillus ruminis gene for 16S ribosomal RNA, partial sequence, strain: JCM 1152 |
LC064897 |
1465 |
|
1623 tax ID |
[Ref.: #124043] |
Ligilactobacillus ruminis JCM:1152 gene for 16S rRNA, partial sequence. |
LC723858 |
1506 |
|
1623 tax ID |
* |
[Ref.: #20218] |
Lactobacillus ruminis 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer region, complete sequence; and 23S ribosomal RNA gene, partial sequence |
AF080103 |
533 |
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1623 tax ID |
* |
[Ref.: #20218] |
Lactobacillus ruminus 16S ribosomal RNA |
M58828 |
1567 |
|
1623 tax ID |
* |
[Ref.: #20218] |
Lactobacillus ruminis gene for 16S rRNA, partial sequence, strain: JCM 1152 |
AB289286 |
659 |
|
1623 tax ID |
* |
[Ref.: #20218] |
Lactobacillus ruminis gene for 16S rRNA, partial sequence, strain: NBRC 102161 |
AB326354 |
1488 |
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1623 tax ID |
* |
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Availability in culture collections
External links
[Ref.: #8789] |
Culture collection no. |
DSM 20403, ATCC 27780, CCUG 39465, JCM 1152, LMG 10756, CIP 103153, BCRC 14620, CECT 4061, KCTC 3601, NBRC 102161, NCFB 2029, NCIMB 702029, NRIC 1689, NRRL B-14853, VTT E-97852, NCDO 2029 |
[Ref.: #75982] |
SI-ID 3363
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* |
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Literature: |
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Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Pathogenicity |
A Comparative Characterization of Different Host-sourced Lactobacillus ruminis Strains and Their Adhesive, Inhibitory, and Immunomodulating Functions. |
Yu X, Avall-Jaaskelainen S, Koort J, Lindholm A, Rintahaka J, von Ossowski I, Palva A, Hynonen U |
Front Microbiol |
10.3389/fmicb.2017.00657 |
2017 |
* |
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References
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#8789 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 20403
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-
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#40544 |
; Curators of the CIP;
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#54804 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 39465
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#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
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#68371 |
Automatically annotated from API 50CH acid .
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#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
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#75982 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID3363.1 )
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#122313 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 103153
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#124043 |
Isabel Schober, Julia Koblitz:
Data extracted from sequence databases, automatically matched based on designation and taxonomy .
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- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
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