Name: Heyndrickxia coagulans M-39
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 650

Type strain:

Species: Heyndrickxia coagulans

Strain Designation: M-39

Culture col. no.: DSM 2314, ATCC 23498, NCIB 10276, JCM 20478, IAM 12320, NCIMB 10276

Strain history: IAM 12320 <-- O. Nakayama M-39 ("Bacillus racemilacticus").

NCBI tax ID(s): 1398 (species)

SI-ID 92159

LMG 6938, ATCC 23498, DSM 2314, IAM 12320, NCIB 10276, NCIMB 10276, JCM 20478

Section

Heyndrickxia coagulans M-39 is a spore-forming, thermophilic, Gram-positive human pathogen that produces lactate and was isolated from rhizosphere.

lactate production
Gram-positive
spore-forming
human pathogen
thermophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Heyndrickxia*
	Species	**Heyndrickxia coagulans**
	Full Scientific Name (LPSN)	Heyndrickxia coagulans (Hammer 1915) Narsing Rao et al. 2023

	Synonym	Bacillus coagulans
	Synonym	Weizmannia coagulans

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1042]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #1042]

Culture medium growth

[Ref.: #1042]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1042]

Culture medium composition

expand / minimize

[Ref.: #1042]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1042]

Culture medium growth

[Ref.: #1042]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1042]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1042]			growth	55 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #1042]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %95
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #1042]	Name of produced compound	L(+) lactic acid
[Ref.: #1042]	Name of produced compound	DL lactic acid

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1042]	Sample type/isolated from	rhizosphere

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kofu, Yamanashi Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Plant

#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1042]	Pathogenicity (human)	yes, in single cases
[Ref.: #1042]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Heyndrickxia coagulans DSM 2314	GCA_006716385	complete	GenBank	1398 tax ID	*
[Ref.: #66792]	Bacillus coagulans strain DSM 2314	1398.125	complete	PATRIC	1398 tax ID	*

[Ref.: #1042]

GC-content

45.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Weizmannia coagulans DSM 2314 NCBI: GCA_006716385.1
[Ref.: #69481]	spore-forming	yes	95	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Weizmannia coagulans DSM 2314 NCBI: GCA_006716385.1
[Ref.: #69480]	flagellated	yes	80.82	no
[Ref.: #69480]	gram-positive	yes	83.36	no
[Ref.: #69480]	anaerobic	no	98.436	no
[Ref.: #69480]	aerobic	yes	72.679	no
[Ref.: #69480]	halophile	yes	53.995	no
[Ref.: #69480]	spore-forming	yes	94.227	no
[Ref.: #69480]	thermophile	no	57.818	no
[Ref.: #69480]	glucose-util	yes	92.351	no
[Ref.: #69480]	motile	yes	88.967	no
[Ref.: #69480]	glucose-ferment	no	69.451	no

Availability in culture collections External links

[Ref.: #1042]

Culture collection no.

DSM 2314, ATCC 23498, NCIB 10276, JCM 20478, IAM 12320, NCIMB 10276

[Ref.: #70325]

SI-ID 92159

Literature:

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Revisiting the production of L( +)-lactic acid from vine shoots: bioconversion improvements by employing thermotolerant bacteria.	Garita-Cambronero J, Hijosa-Valsero M, Paniagua-Garcia AI, Diez-Antolinez R	Appl Microbiol Biotechnol	10.1007/s00253-021-11693-1	2021	*
Biotechnology	Production of l(+)-lactic acid from acid pretreated sugarcane bagasse using Bacillus coagulans DSM2314 in a simultaneous saccharification and fermentation strategy.	van der Pol EC, Eggink G, Weusthuis RA	Biotechnol Biofuels	10.1186/s13068-016-0646-3	2016	*
Metabolism	Precultivation of Bacillus coagulans DSM2314 in the presence of furfural decreases inhibitory effects of lignocellulosic by-products during L(+)-lactic acid fermentation.	van der Pol E, Springer J, Vriesendorp B, Weusthuis R, Eggink G	Appl Microbiol Biotechnol	10.1007/s00253-016-7725-z	2016	*
Metabolism	Lactic acid production from lime-treated wheat straw by Bacillus coagulans: neutralization of acid by fed-batch addition of alkaline substrate.	Maas RH, Bakker RR, Jansen ML, Visser D, de Jong E, Eggink G, Weusthuis RA	Appl Microbiol Biotechnol	10.1007/s00253-008-1361-1	2008	*

References

#1042

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2314

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70325

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92159.1 )

* These data were automatically processed and therefore are not curated

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Weizmannia coagulans DSM 2314

Weizmannia coagulans DSM 2314

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