Name: Stella vacuolata DSM 5901
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 65

Type strain:

Species: Stella vacuolata

Culture col. no.: DSM 5901, ATCC 43931, AUCM B-1552, BKM B-1552, DSM 3699, VKM B-1552

Strain history: <- VKM

NCBI tax ID(s): 1123295 (strain), 217070 (species)

SI-ID 42131

ATCC 43931, VKM B-1552, DSM 5901, DSM 3699

Special Collections

Section

Stella vacuolata DSM 5901 is a microaerophile, chemoorganotroph, Gram-negative bacterium that forms circular colonies and was isolated from horse manure and sewage sludge of a piggery.

colony-forming
Gram-negative
star-shaped
chemoorganotroph
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Stellaceae*
	Genus	*Stella*
	Species	**Stella vacuolata**
	Full Scientific Name (LPSN)	Stella vacuolata Vasilyeva 1985

Information on morphological and physiological properties Morphology

[Ref.: #23248]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.327

[Ref.: #23248]	Cell length	1.9-2.5 µm

[Ref.: #23248]	Cell shape	star-shaped

[Ref.: #23248]	Motility	no

[Ref.: #23248]	Colony size	2.5 mm
[Ref.: #23248]	Colony color	milky white
[Ref.: #23248]	Colony shape	circular

Multimedia content

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Caption:

Micrograph of DSM 5901. Scale bar represent 5 um.

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ANCALOMICROBIUM MEDIUM (DSMZ Medium 603)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2353]			growth	28 °C
[Ref.: #23248]			optimum	28 °C

	pH	Kind of pH		pH
[Ref.: #23248]			growth	7

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

microaerophile

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Nutrition type

chemoorganotroph

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Ability of spore formation

no Confidence in %95

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23248]		NaCl		growth	1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23248]	2-oxoglutarate ChEBI	+	growth
[Ref.: #23248]	acetate ChEBI	+	growth
[Ref.: #23248]	butyrate ChEBI	-	growth
[Ref.: #23248]	cellulose ChEBI	-	hydrolysis
[Ref.: #23248]	citrate ChEBI	+	growth
[Ref.: #23248]	D-alanine ChEBI	+	growth
[Ref.: #23248]	formate ChEBI	+	growth
[Ref.: #23248]	fumarate ChEBI	+	growth
[Ref.: #23248]	gelatin ChEBI	-	hydrolysis
[Ref.: #23248]	gluconate ChEBI	-	growth
[Ref.: #23248]	L-alanine ChEBI	+	growth
[Ref.: #23248]	L-arginine ChEBI	-	growth
[Ref.: #23248]	L-asparagine ChEBI	+	growth
[Ref.: #23248]	L-aspartate ChEBI	-	growth
[Ref.: #23248]	L-cysteine ChEBI	+	growth
[Ref.: #23248]	L-cystine ChEBI	+	growth
[Ref.: #23248]	L-glutamate ChEBI	+	growth
[Ref.: #23248]	L-glutamine ChEBI	+	growth
[Ref.: #23248]	L-histidine ChEBI	-	growth
[Ref.: #23248]	L-lysine ChEBI	-	growth
[Ref.: #23248]	L-proline ChEBI	-	growth
[Ref.: #23248]	L-serine ChEBI	-	growth
[Ref.: #23248]	lactate ChEBI	+	growth
[Ref.: #23248]	malate ChEBI	+	growth
[Ref.: #23248]	pyruvate ChEBI	+	growth
[Ref.: #23248]	starch ChEBI	-	hydrolysis
[Ref.: #23248]	succinate ChEBI	+	growth
[Ref.: #23248]	threonine ChEBI	-	growth
[Ref.: #23248]	valerate ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23248]	Sample type/isolated from	horse manure and sewage sludge of a piggery
[Ref.: #23248]	Geographic location (country and/or sea, region)	Leningrad region
[Ref.: #23248]	Country	Russia
[Ref.: #23248]	Country ISO 3 Code	RUS
[Ref.: #23248]	Continent	Europe

[Ref.: #2353]	Sample type/isolated from	horse manure
[Ref.: #2353]	Country	Russia
[Ref.: #2353]	Country ISO 3 Code	RUS
[Ref.: #2353]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Sewage sludge
#Host	#Mammals	#Equidae (Horse)
#Host	#Mammals	#Suidae (Pig,Swine)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

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Global distribution of 16S sequence AJ535711 (>99% sequence identity) for Stella vacuolata from Microbeatlas

Aquatic Samples	90
Soil Samples	27
Animal Samples	12
Plant Samples	7
Total Samples	136

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Stella vacuolata 16S rRNA gene, strain DSM5901	AJ535711	1447	GenBank ENA	217070 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Stella vacuolata ATCC 43931	GCA_006739055	complete	GenBank ENA	217070 tax ID	*
[Ref.: #66792]	Stella vacuolata strain ATCC 43931	217070.3	complete	PATRIC	217070 tax ID	*
[Ref.: #66792]	Stella vacuolata ATCC 43931	2883517513	complete	JGI IMG/M	217070 tax ID	*

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GC-content

73.50 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Stella vacuolata strain ATCC 43931 PATRIC: 217070.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	95	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Stella vacuolata ATCC 43931 NCBI: GCA_006739055.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.327	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.203	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	73.671	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	82.189	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.053	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	65.176	no

Availability in culture collections External links

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Culture collection no.

DSM 5901, ATCC 43931, AUCM B-1552, BKM B-1552, DSM 3699, VKM B-1552

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SI-ID 42131

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequences of Three Star-Shaped Bacteria, Stella humosa, Stella vacuolata, and Stella Species ATCC 35155.	Shibai A, Maeda T, Kawada M, Kotani H, Sakata N, Furusawa C	Microbiol Resour Announc	10.1128/MRA.00719-19	2019	*
Phylogeny	Phylogenetic relationships of the genera Stella, Labrys and Angulomicrobium within the 'Alphaproteobacteria' and description of Angulomicrobium amanitiforme sp. nov.	Fritz I, Strompl C, Abraham WR	Int J Syst Evol Microbiol	10.1099/ijs.0.02746-0	2004	*

References

#2353

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5901

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23248

L. V. VASILYEVA: Stella, a New Genus of Soil Prosthecobacteria, with Proposals for Stella humosa sp. nov. and Stella vacuolata sp. nov.. IJSEM 35: 518 - 521 1985 ( DOI 10.1099/00207713-35-4-518 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69749

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42131.1 )

* These data were automatically processed and therefore are not curated

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Stella vacuolata strain ATCC 43931

Stella vacuolata ATCC 43931

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