[Ref.: #8455]
Sample type/isolated from
fermented beets
[Ref.: #49932]
Sample type/isolated from
Fermented beets (Beta vulgaris)
[Ref.: #67770]
Sample type/isolated from
Fermented beets
* marker position based on {}
Isolation sources categories
#Engineered
#Food production
-
Information on genomic background e.g. entries in nucleic sequence databass Sequence information
16S Sequence information:
Only first 5 entries are displayed. Click here to see all. Click here to see only first 5 entries.
Sequence accession description
Seq. accession number
Sequence length (bp)
Sequence database
Associated NCBI tax ID
[Ref.: #20218]
Lactobacillus fermentum gene for 16S rRNA, partial sequence, strain: ATCC 14931
AB017345
501
1613 tax ID
*
[Ref.: #20218]
Lactobacillus fermentum 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer region, complete sequence; and 23S ribosomal RNA gene, partial sequence
AF080099
518
1613 tax ID
*
[Ref.: #20218]
Lactobacillus fermentum ATCC 14931 16S ribosomal RNA gene, partial sequence
AF429506
515
1613 tax ID
*
[Ref.: #20218]
Lactobacillus fermentum strain ATCC 14931 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence
AF429593
523
1613 tax ID
*
[Ref.: #20218]
Lactobacillus fermentum gene for 16S ribosomal RNA, partial sequence
D31689
159
1613 tax ID
*
[Ref.: #20218]
Lactobacillus fermentum 16S ribosomal RNA
M58819
1580
1613 tax ID
*
[Ref.: #20218]
Lactobacillus fermentum strain CIP 102980 16S ribosomal RNA gene, complete sequence
JN175331
1502
1613 tax ID
*
[Ref.: #20218]
Lactobacillus fermentum gene for 16S rRNA, partial sequence, strain: JCM 1137
AB289104
677
1613 tax ID
*
[Ref.: #20218]
Lactobacillus fermentum gene for 16S rRNA, partial sequence, strain: JCM 1173
AB289105
672
1613 tax ID
*
[Ref.: #20218]
Lactobacillus fermentum 16S ribosomal RNA, partial sequence; 16S/23S intergenic spacer region, complete sequence; and 23S ribosomal RNA partial sequence
AF182720
665
1613 tax ID
*
[Ref.: #20218]
Lactobacillus fermentum gene for 16S rRNA, partial sequence, strain: JCM 12530
AB289114
689
1613 tax ID
*
[Ref.: #20218]
Lactobacillus fermentum strain LMG 9846 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence
EU161600
785
1613 tax ID
*
[Ref.: #20218]
Lactobacillus fermentum gene for 16S rRNA, partial sequence, strain: NBRC 15885
AB626052
1501
1613 tax ID
*
[Ref.: #20218]
L.fermentum 16S rRNA gene
X61142
1381
1613 tax ID
*
[Ref.: #67770]
Lactobacillus fermentum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1173
LC065036
1477
1613 tax ID
Availability in culture collections External links
[Ref.: #8455]
Culture collection no.
DSM 20052 , ATCC 14931 , NCDO 1750, CCUG 30138 , LMG 6902 , JCM 1173 , BCRC 12190 , CECT 4007 , CIP 102980 , IFO 15885 , KCTC 3112 , NBRC 15885 , NCIMB 11840, NRIC 1752 , NRRL B-4524 , VTT E-93489
[Ref.: #20218]
Associated Passport(s) in StrainInfo
13583 , 13582 , 137447
Literature:
Only first 10 entries are displayed. Click here to see all. Click here to see only first 10 entries.
Topic
Title
Authors
Journal
DOI
Year
Pathogenicity
Digoxigenin-labeled deoxyribonucleic acid probes for the enumeration of bifidobacteria in fecal samples.
Kaneko T, Kurihara H
J Dairy Sci
10.3168/jds.S0022-0302(97)76054-5
1997
*
Metabolism
Evaluation of nitric oxide production by lactobacilli.
Xu J, Verstraete W
Appl Microbiol Biotechnol
10.1007/s002530100616
2001
*
Phylogeny
Development and assessment of a real-time pcr assay for rapid and sensitive detection of a novel thermotolerant bacterium, Lactobacillus thermotolerans, in chicken feces.
Selim AS, Boonkumklao P, Sone T, Assavanig A, Wada M, Yokota A
Appl Environ Microbiol
10.1128/AEM.71.8.4214-4219.2005
2005
*
Metabolism
Effects of ensilage on storage and enzymatic degradability of sugar beet pulp.
Zheng Y, Yu C, Cheng YS, Zhang R, Jenkins B, VanderGheynst JS
Bioresour Technol
10.1016/j.biortech.2010.09.105
2010
*
Enzymology
Stable integration and expression of heterologous genes in several lactobacilli using an integration vector constructed from the integrase and attP sequences of phage PhiAT3 isolated from Lactobacillus casei ATCC 393.
Lin CF, Lo TC, Kuo YC, Lin TH
Appl Microbiol Biotechnol
10.1007/s00253-012-4393-5
2012
*
Phylogeny
Lactobacillus gorillae sp. nov., isolated from the faeces of captive and wild western lowland gorillas (Gorilla gorilla gorilla).
Tsuchida S, Kitahara M, Nguema PPM, Norimitsu S, Fujita S, Yamagiwa J, Ngomanda A, Ohkuma M, Ushida K
Int J Syst Evol Microbiol
10.1099/ijs.0.068429-0
2014
*
Phylogeny
Lactobacillus fermentum FTDC 8312 combats hypercholesterolemia via alteration of gut microbiota.
Lye HS, Kato T, Low WY, Taylor TD, Prakash T, Lew LC, Ohno H, Liong MT
J Biotechnol
10.1016/j.jbiotec.2017.09.007
2017
*
Metabolism
Effect of Lyophilized, Encapsulated Lactobacillus fermentum and Lactulose Feeding on Growth Performance, Heavy Metals, and Trace Element Residues in Rainbow Trout (Oncorhynchus mykiss) Tissues.
Madreseh S, Ghaisari HR, Hosseinzadeh S
Probiotics Antimicrob Proteins
10.1007/s12602-018-9487-7
2019
*
Genetics
Genomic characterization of Lactobacillus fermentum DSM 20052.
Brandt K, Nethery MA, O'Flaherty S, Barrangou R
BMC Genomics
10.1186/s12864-020-6740-8
2020
*
Phylogeny
Comparison of 16S rRNA Gene Based Microbial Profiling Using Five Next-Generation Sequencers and Various Primers.
Park C, Kim SB, Choi SH, Kim S
Front Microbiol
10.3389/fmicb.2021.715500
2021
*
[Influence lactobacilli on the functional activity of macrophages and delayed hypersensitivity reaction in mice].
Ielyns'ka NO, Kur'iata NV, Filippova TO, Ivanytsia VO
Mikrobiol Z
2003
*
Changes in nutrient consumption patterns of Lactobacillus fermentum mediated by sodium lactate.
Zhang K, Zhang Z, Guo X, Guo R, Zhu L, Qiu X, Yu X, Chai J, Gu C, Feng Z
J Sci Food Agric
10.1002/jsfa.12295
2022
*
Use of Selected Lactic Acid Bacteria for the Fermentation of Legume-Based Water Extracts.
Demarinis C, Verni M, Pinto L, Rizzello CG, Baruzzi F
Foods
10.3390/foods11213346
2022
*
References
#8455
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 20052
#38114
; Curators of the CIP;
#49932
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 30138
#66794
Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg:
BRENDA, the ELIXIR core data resource in 2021: new developments and updates.
Nucleic Acids Res. 49:
D498 - D508
2020 (
DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371
Automatically annotated from API 50CH acid .
#69479
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
* These data were automatically processed and therefore are not curated
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