[Ref.: #8455] |
Sample type/isolated from |
fermented beets |
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[Ref.: #49932] |
Sample type/isolated from |
Fermented beets (Beta vulgaris) |
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[Ref.: #67770] |
Sample type/isolated from |
Fermented beets |
* marker position based on {}
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Isolation sources categories |
#Engineered |
#Food production |
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Information on genomic background e.g. entries in nucleic sequence databass
Sequence information
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16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
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Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #67770] |
Lactobacillus fermentum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1173 |
LC065036 |
1477 |
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1613 tax ID |
[Ref.: #20218] |
Lactobacillus fermentum 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer region, complete sequence; and 23S ribosomal RNA gene, partial sequence |
AF080099 |
518 |
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1613 tax ID |
* |
[Ref.: #20218] |
Lactobacillus fermentum ATCC 14931 16S ribosomal RNA gene, partial sequence |
AF429506 |
515 |
|
1613 tax ID |
* |
[Ref.: #20218] |
Lactobacillus fermentum strain ATCC 14931 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence |
AF429593 |
523 |
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1613 tax ID |
* |
[Ref.: #20218] |
Lactobacillus fermentum gene for 16S ribosomal RNA, partial sequence |
D31689 |
159 |
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1613 tax ID |
* |
[Ref.: #20218] |
Lactobacillus fermentum 16S ribosomal RNA |
M58819 |
1580 |
|
1613 tax ID |
* |
[Ref.: #20218] |
Lactobacillus fermentum strain CIP 102980 16S ribosomal RNA gene, complete sequence |
JN175331 |
1502 |
|
1613 tax ID |
* |
[Ref.: #20218] |
Lactobacillus fermentum gene for 16S rRNA, partial sequence, strain: JCM 1137 |
AB289104 |
677 |
|
1613 tax ID |
* |
[Ref.: #20218] |
Lactobacillus fermentum gene for 16S rRNA, partial sequence, strain: JCM 1173 |
AB289105 |
672 |
|
1613 tax ID |
* |
[Ref.: #20218] |
Lactobacillus fermentum 16S ribosomal RNA, partial sequence; 16S/23S intergenic spacer region, complete sequence; and 23S ribosomal RNA partial sequence |
AF182720 |
665 |
|
1613 tax ID |
* |
[Ref.: #20218] |
Lactobacillus fermentum gene for 16S rRNA, partial sequence, strain: JCM 12530 |
AB289114 |
689 |
|
1613 tax ID |
* |
[Ref.: #20218] |
Lactobacillus fermentum strain LMG 9846 16S-23S ribosomal RNA intergenic spacer and 23S ribosomal RNA gene, partial sequence |
EU161600 |
785 |
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1613 tax ID |
* |
[Ref.: #20218] |
Lactobacillus fermentum gene for 16S rRNA, partial sequence, strain: NBRC 15885 |
AB626052 |
1501 |
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1613 tax ID |
* |
[Ref.: #20218] |
L.fermentum 16S rRNA gene |
X61142 |
1381 |
|
1613 tax ID |
* |
[Ref.: #20218] |
Lactobacillus fermentum gene for 16S rRNA, partial sequence, strain: ATCC 14931 |
AB017345 |
501 |
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1613 tax ID |
* |
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Availability in culture collections
External links
[Ref.: #8455] |
Culture collection no. |
DSM 20052, ATCC 14931, NCDO 1750, CCUG 30138, LMG 6902, JCM 1173, BCRC 12190, CECT 4007, CIP 102980, IFO 15885, KCTC 3112, NBRC 15885, NCIMB 11840, NRIC 1752, NRRL B-4524, VTT E-93489 |
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Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
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Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Phylogeny |
Comparison of 16S rRNA Gene Based Microbial Profiling Using Five Next-Generation Sequencers and Various Primers. |
Park C, Kim SB, Choi SH, Kim S |
Front Microbiol |
10.3389/fmicb.2021.715500 |
2021 |
* |
Genetics |
Genomic characterization of Lactobacillus fermentum DSM 20052. |
Brandt K, Nethery MA, O'Flaherty S, Barrangou R |
BMC Genomics |
10.1186/s12864-020-6740-8 |
2020 |
* |
Metabolism |
Effect of Lyophilized, Encapsulated Lactobacillus fermentum and Lactulose Feeding on Growth Performance, Heavy Metals, and Trace Element Residues in Rainbow Trout (Oncorhynchus mykiss) Tissues. |
Madreseh S, Ghaisari HR, Hosseinzadeh S |
Probiotics Antimicrob Proteins |
10.1007/s12602-018-9487-7 |
2019 |
* |
Phylogeny |
Lactobacillus fermentum FTDC 8312 combats hypercholesterolemia via alteration of gut microbiota. |
Lye HS, Kato T, Low WY, Taylor TD, Prakash T, Lew LC, Ohno H, Liong MT |
J Biotechnol |
10.1016/j.jbiotec.2017.09.007 |
2017 |
* |
Phylogeny |
Lactobacillus gorillae sp. nov., isolated from the faeces of captive and wild western lowland gorillas (Gorilla gorilla gorilla). |
Tsuchida S, Kitahara M, Nguema PPM, Norimitsu S, Fujita S, Yamagiwa J, Ngomanda A, Ohkuma M, Ushida K |
Int J Syst Evol Microbiol |
10.1099/ijs.0.068429-0 |
2014 |
* |
Enzymology |
Stable integration and expression of heterologous genes in several lactobacilli using an integration vector constructed from the integrase and attP sequences of phage PhiAT3 isolated from Lactobacillus casei ATCC 393. |
Lin CF, Lo TC, Kuo YC, Lin TH |
Appl Microbiol Biotechnol |
10.1007/s00253-012-4393-5 |
2012 |
* |
Metabolism |
Effects of ensilage on storage and enzymatic degradability of sugar beet pulp. |
Zheng Y, Yu C, Cheng YS, Zhang R, Jenkins B, VanderGheynst JS |
Bioresour Technol |
10.1016/j.biortech.2010.09.105 |
2010 |
* |
Phylogeny |
Development and assessment of a real-time pcr assay for rapid and sensitive detection of a novel thermotolerant bacterium, Lactobacillus thermotolerans, in chicken feces. |
Selim AS, Boonkumklao P, Sone T, Assavanig A, Wada M, Yokota A |
Appl Environ Microbiol |
10.1128/AEM.71.8.4214-4219.2005 |
2005 |
* |
Metabolism |
Evaluation of nitric oxide production by lactobacilli. |
Xu J, Verstraete W |
Appl Microbiol Biotechnol |
10.1007/s002530100616 |
2001 |
* |
Pathogenicity |
Digoxigenin-labeled deoxyribonucleic acid probes for the enumeration of bifidobacteria in fecal samples. |
Kaneko T, Kurihara H |
J Dairy Sci |
10.3168/jds.S0022-0302(97)76054-5 |
1997 |
* |
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[Influence lactobacilli on the functional activity of macrophages and delayed hypersensitivity reaction in mice]. |
Ielyns'ka NO, Kur'iata NV, Filippova TO, Ivanytsia VO |
Mikrobiol Z |
|
2003 |
* |
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Use of Selected Lactic Acid Bacteria for the Fermentation of Legume-Based Water Extracts. |
Demarinis C, Verni M, Pinto L, Rizzello CG, Baruzzi F |
Foods |
10.3390/foods11213346 |
2022 |
* |
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Changes in nutrient consumption patterns of Lactobacillus fermentum mediated by sodium lactate. |
Zhang K, Zhang Z, Guo X, Guo R, Zhu L, Qiu X, Yu X, Chai J, Gu C, Feng Z |
J Sci Food Agric |
10.1002/jsfa.12295 |
2022 |
* |
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References
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#8455 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 20052
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#38114 |
; Curators of the CIP;
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#49932 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 30138
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#66794 |
Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg:
BRENDA, the ELIXIR core data resource in 2021: new developments and updates.
Nucleic Acids Res. 49:
D498 - D508
2020 (
DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
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#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
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#68371 |
Automatically annotated from API 50CH acid .
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#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
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- * These data were automatically processed and therefore are not curated
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