Lactobacillus delbrueckii subsp. bulgaricus D is an anaerobe, mesophilic prokaryote that was isolated from yoghourt.
anaerobe mesophilic genome sequence| @ref 20215 |
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| Domain Bacillati |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Lactobacillaceae |
| Genus Lactobacillus |
| Species Lactobacillus delbrueckii subsp. bulgaricus |
| Full scientific name Lactobacillus delbrueckii subsp. bulgaricus (Orla-Jensen 1919) Weiss et al. 1984 |
| Synonyms (2) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 8507 | PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231) | Medium recipe at MediaDive | Name: PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Yeast extract 5.0 g/l Na-acetate 5.0 g/l K2HPO4 2.0 g/l (NH4)3 citrate 2.0 g/l Tween 80 1.0 g/l Cysteine hydrochloride 0.5 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 8507 | positive | growth | 37 | mesophilic |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 94 |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8507 | A11.31 | A4alpha L-Lys-D-Asp |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | + | builds acid from | from API 50CH acid |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8507 | - | - | - | - | - | - | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| 8507 | Sample typeyoghourt |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM195313v1 assembly for Lactobacillus delbrueckii subsp. bulgaricus DSM 20080 | complete | 1585 | 97.81 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 94.00 | no |
| 125439 | motility | BacteriaNetⓘ | no | 69.70 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 57.70 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | anaerobe | 99.50 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 94.65 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 77.79 | no |
| 125438 | aerobic | aerobicⓘ | no | 97.50 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 87.96 | no |
| 125438 | thermophilic | thermophileⓘ | no | 97.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 95.50 | no |
| Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|
| New Genetic Determinants for qPCR Identification and the Enumeration of Selected Lactic Acid Bacteria in Raw-Milk Cheese. | Stachelska MA, Ekielski A, Karpinski P, Zelazinski T, Kruszewski B. | Molecules | 10.3390/molecules29071533 | 2024 | |
| Genome mining approach reveals the CRISPR-Cas systems features and characteristics in Lactobacillus delbrueckii strains. | Panahi B, Rostampour M, Ghaffari MR, Nami Y. | Heliyon | 10.1016/j.heliyon.2024.e39920 | 2024 | |
| In Silico Comparative Genomic Analysis Revealed a Highly Conserved Proteolytic System in Lactobacillus delbrueckii. | Elean M, Albarracin L, Villena J, Kitazawa H, Saavedra L, Hebert EM. | Int J Mol Sci | 10.3390/ijms241411309 | 2023 | |
| Subspecies-level genome comparison of Lactobacillus delbrueckii. | Baek MG, Kim KW, Yi H. | Sci Rep | 10.1038/s41598-023-29404-3 | 2023 | |
| Genomic Characterization of Lactobacillus delbrueckii Strains with Probiotics Properties. | De Jesus LCL, Aburjaile FF, Sousa TJ, Felice AG, Soares SC, Alcantara LCJ, Azevedo VAC. | Front Bioinform | 10.3389/fbinf.2022.912795 | 2022 | |
| Advances in the study of the interaction between schistosome infections and the host's intestinal microorganisms. | Hong A, Umar A, Chen H, Yu Z, Huang J. | Parasit Vectors | 10.1186/s13071-024-06245-1 | 2024 | |
| Draft genome sequence of Lactobacillus delbrueckii subsp. bulgaricus LBP UFSC 2230: a tool for preliminary identification of enzymes involved in CLA metabolism. | Kuhl GC, Mazzon RR, Duarte RTD, De Dea Lindner J. | Braz J Microbiol | 10.1007/s42770-021-00479-2 | 2021 | |
| Exploring the Therapeutic Potentials of Exopolysaccharides Derived From Lactic Acid Bacteria and Bifidobacteria: Antioxidant, Antitumor, and Periodontal Regeneration. | Khalil MA, Sonbol FI, Al-Madboly LA, Aboshady TA, Alqurashi AS, Ali SS. | Front Microbiol | 10.3389/fmicb.2022.803688 | 2022 | |
| Identification and Monitoring of Lactobacillus delbrueckii Subspecies Using Pangenomic-Based Novel Genetic Markers. | Kim E, Cho EJ, Yang SM, Kim HY. | J Microbiol Biotechnol | 10.4014/jmb.2009.09034 | 2021 | |
| Probiogenomics of Lactobacillus delbrueckii subsp. lactis CIDCA 133: In Silico, In Vitro, and In Vivo Approaches. | de Jesus LCL, Drumond MM, Aburjaile FF, Sousa TJ, Coelho-Rocha ND, Profeta R, Brenig B, Mancha-Agresti P, Azevedo V. | Microorganisms | 10.3390/microorganisms9040829 | 2021 | |
| Parasites and Microbiota: Dual Interactions and Therapeutic Perspectives. | Al-Rashidi HS, El-Wakil ES. | Microorganisms | 10.3390/microorganisms12102076 | 2024 | |
| Probiotics: an alternative anti-parasite therapy. | Mandal S, Mondal C, Lyndem LM. | J Parasit Dis | 10.1007/s12639-024-01680-4 | 2024 | |
| In Vitro Production of Galactooligosaccharides by a Novel beta-Galactosidase of Lactobacillus bulgaricus. | Arsov A, Ivanov I, Tsigoriyna L, Petrov K, Petrova P. | Int J Mol Sci | 10.3390/ijms232214308 | 2022 | |
| Effect of set-type yoghurt supplemented with the novel probiotic Lantiplantibacillus plantarum 200655 on physicochemical properties and the modulation of oxidative stress-induced damage. | Kariyawasam KMGMM, Lee NK, Paik HD. | Food Sci Biotechnol | 10.1007/s10068-022-01201-0 | 2023 | |
| Probiotics and yogurt modulate oxidative stress and fibrosis in livers of Schistosoma mansoni-infected mice. | El-Khadragy MF, Al-Olayan EM, Elmallah MIY, Alharbi AM, Yehia HM, Abdel Moneim AE. | BMC Complement Altern Med | 10.1186/s12906-018-2406-3 | 2019 | |
| Differentiation of Lacticaseibacillus zeae Using Pan-Genome Analysis and Real-Time PCR Method Targeting a Unique Gene. | Kim E, Yang SM, Kim HY. | Foods | 10.3390/foods10092112 | 2021 | |
| Searching for the one(s): Using Probiotics as Anthelmintic Treatments. | Saracino MP, Vila CC, Baldi PC, Gonzalez Maglio DH. | Front Pharmacol | 10.3389/fphar.2021.714198 | 2021 | |
| Culture-Independent Metagenomic Surveillance of Commercially Available Probiotics with High-Throughput Next-Generation Sequencing. | Patro JN, Ramachandran P, Barnaba T, Mammel MK, Lewis JL, Elkins CA. | mSphere | 10.1128/msphere.00057-16 | 2016 | |
| Genotypic characterization and safety assessment of lactic acid bacteria from indigenous African fermented food products. | Adimpong DB, Nielsen DS, Sorensen KI, Derkx PM, Jespersen L. | BMC Microbiol | 10.1186/1471-2180-12-75 | 2012 | |
| Bile-mediated aminoglycoside sensitivity in Lactobacillus species likely results from increased membrane permeability attributable to cholic acid. | Elkins CA, Mullis LB. | Appl Environ Microbiol | 10.1128/aem.70.12.7200-7209.2004 | 2004 |
| #8507 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20080 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68371 | Automatically annotated from API 50CH acid . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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