Name: Loigolactobacillus coryniformis subsp. torquens 30
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6439

Type strain:

Species: Loigolactobacillus coryniformis subsp. torquens

Strain Designation: 30

Culture col. no.: DSM 20004, ATCC 25600, NCIB 9712, CCUG 30667, JCM 1166, BCRC 14629, CECT 4129, CIP 103134, KCTC 3535, LMG 9197, NCFB 2740, NCIMB 9712, NRIC 1051, NRRL B-4390, NCDO 2740

Strain history: CIP <- 1988, DSM <- I.G. Albo-Elnaga: strain 30

NCBI tax ID(s): 115542 (subspecies)

SI-ID 3272

LMG 9197, ATCC 25600, JCM 1166, NCFB 2740, NCIMB 9712, CCUG 30667, NCIB 9712, CIP 103134, NCDO 2740, CCRC 14629, CECT 4129, KCTC 3535, NRRL B-4390, BCRC 14629, DSM 20004

Other strains from Loigolactobacillus coryniformis subsp. torquens

L. coryniformis subsp. torquens 7/23, DSM 20005, JCM 1099

Section

Loigolactobacillus coryniformis subsp. torquens 30 is a facultative anaerobe, mesophilic bacterium that was isolated from air of cow shed.

facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Loigolactobacillus*
	Species	**Loigolactobacillus coryniformis subsp. torquens**
	Full Scientific Name (LPSN)	Loigolactobacillus coryniformis subsp. torquens (Abo-Elnaga and Kandler 1965) Zheng et al. 2020

Synonym

Lactobacillus coryniformis subsp. torquens

Information on morphological and physiological properties Morphology

[Ref.: #118761]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #118761]	Cell shape	rod-shaped

[Ref.: #118761]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91.916

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8419]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #8419]

Culture medium growth

[Ref.: #8419]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8419]

Culture medium composition

expand / minimize

[Ref.: #40183]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #40183]

Culture medium growth

[Ref.: #40183]

Culture medium composition

expand / minimize

[Ref.: #118761]

Culture medium

CIP Medium 40

[Ref.: #118761]

Culture medium growth

[Ref.: #118761]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #8419]		growth	30 °C
[Ref.: #40183]		growth	37 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #118761]		growth	15-37 °C
[Ref.: #118761]	no	growth	10 °C
[Ref.: #118761]	no	growth	45 °C

[Ref.: #8419]	Temperature range	mesophilic
[Ref.: #40183]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #118761]	Temperature range	psychrophilic
[Ref.: #118761]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #118761]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.935

[Ref.: #8419]	Murein short key	A11.31
[Ref.: #8419]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #118761]	nitrate ChEBI	-	reduction
[Ref.: #118761]	nitrate ChEBI	+	respiration
[Ref.: #118761]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #118761]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #118761]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #118761]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #118761]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118761]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #118761]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #50204]

Fatty acid	Percentage	ECL
C16:0	29.4	16
C18:2 ω6,9c/C18:0 ANTE	16.1	17.724
C18:1 ω7c /12t/9t	14.7	17.824
C16:1 ω7c	9.4	15.819
C14:0	8	14
C18:1 ω9c	6.9	17.769
C19:0 CYCLO ω9c	5.1	18.87
C16:1 ω7c/C15:0 ISO 2OH	3.5	15.85
C18:0	3.4	18
C15:0	1.5	15
C17:0 CYCLO	1.3	16.888
Unidentified	0.8	13.244

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8419]	14422	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	+	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #118761]	9176	not determinedn.d.	-	-	-	-	-	-	-	-	-	+	+	+	+	-	+	-	-	+	+	-	-	+	-	+	+	+	-	+/-	+/-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118761]	7383	-	+	-	-	-	+	-	-	-	-	+	+	-	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8419]	Sample type/isolated from	air of cow shed

[Ref.: #50204]	Sample type/isolated from	Air of cow shed

[Ref.: #67770]	Sample type/isolated from	Air of cowshed

[Ref.: #118761]	Sample type/isolated from	Environment, Air contaminant, dairy barn
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Livestock (Husbandry)
#Environmental	#Air	#Indoor Air
#Host	#Mammals	#Bovinae (Cow, Cattle)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC065033 (>99% sequence identity) for Loigolactobacillus coryniformis from Microbeatlas

Aquatic Samples	2103
Soil Samples	965
Animal Samples	5503
Plant Samples	630
Total Samples	9201

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8419]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118761]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus coryniformis subsp. torquens gene for 16S ribosomal RNA, partial sequence, strain: JCM 1166	LC065033	1513	ENA	1423822 tax ID
[Ref.: #20218]	Lactobacillus coryniformis subsp. torquens 16S rRNA gene, strain CECT 4129	AJ575741	1521	ENA	1423822 tax ID	*
[Ref.: #20218]	Lactobacillus coryniformis subsp. torquens gene for 16S rRNA, partial sequence, strain: JCM 1166	AB289065	682	ENA	1423822 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535	GCA_000184285	contig	GenBank	1423822 tax ID
[Ref.: #67770]	Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535	GCA_001435425	scaffold	GenBank	1423822 tax ID
[Ref.: #66792]	Lactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 strain DSM20004	1423822.12	plasmid	PATRIC	1423822 tax ID	*
[Ref.: #66792]	Lactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 strain DSM20004	1423822.11	plasmid	PATRIC	1423822 tax ID	*
[Ref.: #66792]	Lactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 strain DSM20004	1423822.8	complete	PATRIC	1423822 tax ID	*
[Ref.: #66792]	Lactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 strain DSM20004	1423822.10	plasmid	PATRIC	1423822 tax ID	*

[Ref.: #8419]	GC-content	45.1 mol%
[Ref.: #67770]	GC-content	42.9 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 strain DSM20004 PATRIC: 1423822.8
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 DSM 20004 NCBI: GCA_002706705.1
[Ref.: #69480]	flagellated	no	95.768	no
[Ref.: #69480]	gram-positive	yes	96.526	no
[Ref.: #69480]	anaerobic	no	84.97	no
[Ref.: #69480]	halophile	yes	75.131	no
[Ref.: #69480]	spore-forming	no	90.686	no
[Ref.: #69480]	glucose-util	yes	86.443	no
[Ref.: #69480]	aerobic	no	96.732	no
[Ref.: #69480]	thermophile	no	99.174	no
[Ref.: #69480]	motile	no	93.232	no
[Ref.: #69480]	glucose-ferment	yes	83.987	no

Availability in culture collections External links

[Ref.: #8419]

Culture collection no.

DSM 20004, ATCC 25600, NCIB 9712, CCUG 30667, JCM 1166, BCRC 14629, CECT 4129, CIP 103134, KCTC 3535, LMG 9197, NCFB 2740, NCIMB 9712, NRIC 1051, NRRL B-4390, NCDO 2740

[Ref.: #75913]

SI-ID 3272

References

#8419

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20004

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40183 ; Curators of the CIP;
#50204 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30667

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75913

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3272.1 )

#118761 Collection of Institut Pasteur ; Curators of the CIP; CIP 103134
* These data were automatically processed and therefore are not curated

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Search for species Loigolactobacillus coryniformis subsp. torquens in external resources:
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Lactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 strain DSM20004

Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 DSM 20004

Change proposal

Change proposal