Name: Pediococcus parvulus S182
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6387

Type strain:

Species: Pediococcus parvulus

Strain Designation: S182, S 182

Culture col. no.: CCUG 28439, CCM 3450, DSM 20332, ATCC 19371, NCDO 1634, NCIB 9447, JCM 20450, BCRC 12575, CECT 813, CGMCC 1.2694, CIP 102262, IAM 12291, IFO 12235, JCM 5889, KCTC 3615, LMG 11486, NBRC 100673, NBRC 12235, NCIMB 9447, VKM B-1604

Strain history: CIP <- 1986, NCFB <- H.R. White, Queen Elizabeth College, London, UK: strain S 182

NCBI tax ID(s): 54062 (species)

SI-ID 3822

LMG 11486, ATCC 19371, CCM 3450, CCUG 28439, CIP 102262, DSM 20332, IFO 12235, JCM 5889, NCFB 1634, NCIMB 9447, NCIB 9447, NCDO 1634, CCRC 12575, IAM12291, VKM B-1604, CECT 813, VTT E-88315, KCTC 3615, NBRC 12235, NBRC 100673, BCRC 12575, CGMCC 1.2694, VTT E-96315, VTT E-042252, CECT 7350, JCM 20450

Other strains from Pediococcus parvulus

P. parvulus CCUG 37910
P. parvulus CCUG 41976, LMG 13386

Section

Pediococcus parvulus S182 is a microaerophile, mesophilic bacterium that was isolated from silage.

mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Pediococcus*
	Species	**Pediococcus parvulus**
	Full Scientific Name (LPSN)	Pediococcus parvulus Günther and White 1961 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #121602]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #121602]	Cell shape	coccus-shaped

[Ref.: #121602]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.163

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8723]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #8723]

Culture medium growth

[Ref.: #8723]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8723]

Culture medium composition

expand / minimize

[Ref.: #38095]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #38095]

Culture medium growth

[Ref.: #38095]

Culture medium composition

expand / minimize

[Ref.: #121602]

Culture medium

CIP Medium 41

[Ref.: #121602]

Culture medium growth

[Ref.: #121602]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #121602]

Culture medium

CIP Medium 40

[Ref.: #121602]

Culture medium growth

[Ref.: #121602]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #8723]		growth	30 °C
[Ref.: #38095]		growth	30 °C
[Ref.: #49241]		growth	30 °C
[Ref.: #49241]		growth	37 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #121602]		growth	25-37 °C
[Ref.: #121602]	no	growth	15 °C
[Ref.: #121602]	no	growth	45 °C

[Ref.: #8723]	Temperature range	mesophilic
[Ref.: #38095]	Temperature range	mesophilic
[Ref.: #49241]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #121602]	Temperature range	mesophilic
[Ref.: #121602]	Temperature range	psychrophilic
[Ref.: #121602]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #49241]	Oxygen tolerance	microaerophile
[Ref.: #121602]	Oxygen tolerance	facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %90
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

[Ref.: #8723]	Murein short key	A11.31
[Ref.: #8723]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #121602]	nitrate ChEBI	-	reduction
[Ref.: #121602]	nitrate ChEBI	+	respiration
[Ref.: #121602]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #121602]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121602]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121602]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121602]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121602]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121602]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8723]	14624	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #8723]	14623	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #121602]	8917	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+/-	+/-	+/-	-	-	-	-	-	-	-	-	+/-	-	-	+/-	+/-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121602]	6978	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8723]	Sample type/isolated from	silage

[Ref.: #49241]	Sample type/isolated from	Silage

[Ref.: #67770]	Sample type/isolated from	Silage

[Ref.: #121602]	Sample type/isolated from	Environment, Silage
[Ref.: #121602]	Isolation date	1962
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Animal feed
#Engineered	#Biodegradation	#Composting
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC071841 (>99% sequence identity) for Pediococcus parvulus from Microbeatlas

Aquatic Samples	362
Soil Samples	369
Animal Samples	2941
Plant Samples	338
Total Samples	4010

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8723]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121602]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pediococcus parvulus gene for 16S ribosomal RNA, partial sequence, strain: JCM 20450	LC258155	1511	ENA	54062 tax ID
[Ref.: #67770]	Pediococcus parvulus gene for 16S ribosomal RNA, partial sequence, strain: JCM 5889	LC071841	1474	ENA	54062 tax ID
[Ref.: #20218]	Lactobacillus reuteri ATCC 19371 16S ribosomal RNA gene, partial sequence	AF429538	515	ENA	1598 tax ID	*
[Ref.: #20218]	Lactobacillus reuteri strain ATCC 19371 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF429625	516	ENA	1598 tax ID	*
[Ref.: #20218]	Pediococcus parvulus DNA for 16S ribosomal RNA, partial sequence	D88528	1447	ENA	54062 tax ID	*
[Ref.: #20218]	Pediococcus parvulus gene for 16S rRNA, partial sequence, strain: NBRC 100673	AB681216	1501	ENA	54062 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pediococcus parvulus NBRC 100673	GCA_007990205	contig	GenBank	54062 tax ID	*
[Ref.: #66792]	Pediococcus parvulus JCM 5889	GCA_014651215	contig	GenBank	54062 tax ID	*
[Ref.: #66792]	Pediococcus parvulus strain DSM 20332	54062.4	wgs	PATRIC	54062 tax ID	*
[Ref.: #66792]	Pediococcus parvulus strain JCM 5889	54062.14	wgs	PATRIC	54062 tax ID	*
[Ref.: #66792]	Pediococcus parvulus strain NBRC 100673	54062.13	wgs	PATRIC	54062 tax ID	*
[Ref.: #66792]	Pediococcus parvulus DSM 20332	2775507230	draft	JGI IMG/M	54062 tax ID	*

[Ref.: #8723]	GC-content	41.6 mol%
[Ref.: #67770]	GC-content	41.6 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pediococcus parvulus strain NBRC 100673 PATRIC: 54062.13
[Ref.: #69481]	spore-forming	no	90	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pediococcus parvulus strain DSM 20332 PATRIC: 54062.4
[Ref.: #69480]	gram-positive	yes	96.783	no
[Ref.: #69480]	anaerobic	no	91.975	no
[Ref.: #69480]	halophile	yes	92.578	no
[Ref.: #69480]	spore-forming	no	92.371	no
[Ref.: #69480]	glucose-util	yes	94.144	no
[Ref.: #69480]	thermophile	no	99.751	no
[Ref.: #69480]	aerobic	no	96.063	yes
[Ref.: #69480]	flagellated	no	98.614	no
[Ref.: #69480]	motile	no	94.174	no
[Ref.: #69480]	glucose-ferment	yes	88.65	no

Availability in culture collections External links

[Ref.: #8723]

Culture collection no.

CCUG 28439, CCM 3450, DSM 20332, ATCC 19371, NCDO 1634, NCIB 9447, JCM 20450, BCRC 12575, CECT 813, CGMCC 1.2694, CIP 102262, IAM 12291, IFO 12235, JCM 5889, KCTC 3615, LMG 11486, NBRC 100673, NBRC 12235, NCIMB 9447, VKM B-1604

[Ref.: #75860]

SI-ID 3822

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pediococcus ethanolidurans sp. nov., isolated from the walls of a distilled-spirit-fermenting cellar.	Liu L, Zhang B, Tong H, Dong X	Int J Syst Evol Microbiol	10.1099/ijs.0.64407-0	2006	*
Phylogeny	Pediococcus cellicola sp. nov., a novel lactic acid coccus isolated from a distilled-spirit-fermenting cellar.	Zhang B, Tong H, Dong X	Int J Syst Evol Microbiol	10.1099/ijs.0.63778-0	2005	*

References

#8723

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20332

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38095 ; Curators of the CIP;
#49241 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28439

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75860

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3822.1 )

#121602 Collection of Institut Pasteur ; Curators of the CIP; CIP 102262
* These data were automatically processed and therefore are not curated

Change proposal

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Search for species Pediococcus parvulus in external resources:
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PANGAEA
StrainInfo
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Pediococcus parvulus strain NBRC 100673

Pediococcus parvulus strain DSM 20332

Change proposal

Change proposal