Name: Lachnoanaerobaculum saburreum T2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6376

Type strain:

Species: Lachnoanaerobaculum saburreum

Strain Designation: T2

Culture col. no.: DSM 3986, ATCC 33271, CCUG 28089, CIP 105341, JCM 11021, VPI 11763, AIP 10202

Strain history: CIP <- 1997, J.P. Carlier, Inst. Pasteur, Paris, France: strain AIP 10202 <- ATCC <- L.V. Holdeman: strain VPI 11763 <- J.M. Hardie: strain T2

NCBI tax ID(s): 887325 (strain), 467210 (species)

SI-ID 92250

ATCC 33271, CCUG 28089, DSM 3986, CIP 105341, JCM 11021

Other strains from Lachnoanaerobaculum saburreum

L. saburreum CCUG 27987

Section

Lachnoanaerobaculum saburreum T2 is an anaerobe, mesophilic human pathogen that was isolated from human dental plaque.

anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Lachnoanaerobaculum*
	Species	**Lachnoanaerobaculum saburreum**
	Full Scientific Name (LPSN)	Lachnoanaerobaculum saburreum (Prévot 1966) Hedberg et al. 2012

	Synonym	"Catenabacterium* saburreum"*
	Synonym	Eubacterium saburreum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.854

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1556]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #1556]

Culture medium growth

[Ref.: #1556]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1556]

Culture medium composition

expand / minimize

[Ref.: #39269]

Culture medium

MEDIUM 187 - for anaerobic bacteria

[Ref.: #39269]

Culture medium growth

[Ref.: #39269]

Culture medium composition

expand / minimize

[Ref.: #122327]

Culture medium

CIP Medium 187

[Ref.: #122327]

Culture medium growth

[Ref.: #122327]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #1556]	growth	37 °C
[Ref.: #39269]	growth	37 °C
[Ref.: #49092]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #1556]	Temperature range	mesophilic
[Ref.: #39269]	Temperature range	mesophilic
[Ref.: #49092]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1556]	Oxygen tolerance	anaerobe
[Ref.: #49092]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.999

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.991

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #122327]	10047	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1556]	Sample type/isolated from	human dental plaque

[Ref.: #49092]	Sample type/isolated from	Human dental plaque

[Ref.: #67770]	Sample type/isolated from	Human oral cavity

[Ref.: #122327]	Sample type/isolated from	Human, Dental plaque
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Plaque
#Host Body Product	#Oral cavity and Airways	#Dental plaque

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB525414 (>99% sequence identity) for Lachnoanaerobaculum saburreum from Microbeatlas

Aquatic Samples	10
Soil Samples	4
Animal Samples	578
Plant Samples	2
Total Samples	594

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1556]	Pathogenicity (human)	yes, in single cases
[Ref.: #1556]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122327]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1556]	Eubacterium saburreum gene for 16S ribosomal RNA, paertial sequence, strain: JCM 11021	AB525414	1493	ENA	887325 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lachnoanaerobaculum saburreum DSM 3986 DSM 3986	GCA_000185385	scaffold	GenBank	887325 tax ID
[Ref.: #66792]	Lachnoanaerobaculum saburreum DSM 3986	887325.3	wgs	PATRIC	887325 tax ID	*
[Ref.: #66792]	Lachnoanaerobaculum saburreum DSM 3986	649989950	draft	JGI IMG/M	887325 tax ID	*

[Ref.: #1556]

GC-content

37 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lachnoanaerobaculum saburreum DSM 3986 DSM 3986 NCBI: GCA_000185385.1
[Ref.: #69481]	spore-forming	yes	84	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lachnoanaerobaculum saburreum DSM 3986 PATRIC: 887325.3
[Ref.: #69480]	motile	no	89.799	no
[Ref.: #69480]	flagellated	no	94.53	no
[Ref.: #69480]	gram-positive	yes	88.052	no
[Ref.: #69480]	anaerobic	yes	99.404	yes
[Ref.: #69480]	halophile	no	87.408	no
[Ref.: #69480]	spore-forming	no	57.076	no
[Ref.: #69480]	thermophile	no	95.87	yes
[Ref.: #69480]	glucose-util	yes	87.372	no
[Ref.: #69480]	aerobic	no	98.684	yes
[Ref.: #69480]	glucose-ferment	yes	77.714	no

Availability in culture collections External links

[Ref.: #1556]

Culture collection no.

DSM 3986, ATCC 33271, CCUG 28089, CIP 105341, JCM 11021, VPI 11763, AIP 10202

[Ref.: #75849]

SI-ID 92250

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lachnoanaerobaculum gingivalis sp. nov., Isolated from Human Subgingival Dental Plaque of a Gingivitis Lesion.	Lim YK, Park SN, Jo E, Shin JH, Chang YH, Shin Y, Paek J, Kim H, Kook JK	Curr Microbiol	10.1007/s00284-019-01747-z	2019	*
Enzymology	Antimicrobial activity of Streptococcus salivarius K12 on bacteria involved in oral malodour.	Masdea L, Kulik EM, Hauser-Gerspach I, Ramseier AM, Filippi A, Waltimo T	Arch Oral Biol	10.1016/j.archoralbio.2012.02.011	2012	*
Phylogeny	Lachnoanaerobaculum gen. nov., a new genus in the Lachnospiraceae: characterization of Lachnoanaerobaculum umeaense gen. nov., sp. nov., isolated from the human small intestine, and Lachnoanaerobaculum orale sp. nov., isolated from saliva, and reclassification of Eubacterium saburreum (Prevot 1966) Holdeman and Moore 1970 as Lachnoanaerobaculum saburreum comb. nov.	Hedberg ME, Moore ERB, Svensson-Stadler L, Horstedt P, Baranov V, Hernell O, Wai SN, Hammarstrom S, Hammarstrom ML	Int J Syst Evol Microbiol	10.1099/ijs.0.033613-0	2012	*

References

#1556

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3986

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39269 ; Curators of the CIP;
#49092 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28089

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75849

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92250.1 )

#122327 Collection of Institut Pasteur ; Curators of the CIP; CIP 105341
* These data were automatically processed and therefore are not curated

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Lachnoanaerobaculum saburreum DSM 3986 DSM 3986

Lachnoanaerobaculum saburreum DSM 3986

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