Name: Lachnoanaerobaculum saburreum T2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6376

Type strain:

Species: Lachnoanaerobaculum saburreum

Strain Designation: T2

Culture col. no.: DSM 3986, ATCC 33271, CCUG 28089, CIP 105341, JCM 11021, VPI 11763

Strain history: CIP 105341 <-- J. P. Carlier AIP 10202 <-- ATCC 33271 <-- L. V. Holdeman VPI 11763 <-- J. M. Hardie T2.

NCBI tax ID(s): 887325 (strain), 467210 (species)

Other strains from Lachnoanaerobaculum saburreum

L. saburreum CCUG 27987

Section

Lachnoanaerobaculum saburreum T2 is an anaerobe, mesophilic human pathogen that was isolated from human dental plaque.

anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Lachnoanaerobaculum*
	Species	**Lachnoanaerobaculum saburreum**
	Full Scientific Name (PNU)	Lachnoanaerobaculum saburreum (Prévot 1966) Hedberg et al. 2012

	Synonym	"Catenabacterium* saburreum"*
	Synonym	Eubacterium saburreum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1556]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #1556]

Culture medium growth

[Ref.: #1556]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #1556]

Culture medium composition

expand / minimize

[Ref.: #39269]

Culture medium

MEDIUM 187 - for anaerobic bacteria

[Ref.: #39269]

Culture medium growth

[Ref.: #39269]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #1556]	growth	37 °C
[Ref.: #39269]	growth	37 °C
[Ref.: #49092]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #1556]	Temperature range	mesophilic
[Ref.: #39269]	Temperature range	mesophilic
[Ref.: #49092]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1556]	Oxygen tolerance	anaerobe
[Ref.: #49092]	Oxygen tolerance	anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1556]	Sample type/isolated from	human dental plaque

[Ref.: #49092]	Sample type/isolated from	Human dental plaque

[Ref.: #67770]	Sample type/isolated from	Human oral cavity
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Plaque
#Host Body Product	#Oral cavity and Airways	#Dental plaque

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB525414 (>99% sequence identity) for Lachnoanaerobaculum saburreum from Microbeatlas

Aquatic Samples	10
Soil Samples	4
Animal Samples	578
Plant Samples	2
Total Samples	594

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1556]	Pathogenicity (human)	yes, in single cases
[Ref.: #1556]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1556]	Eubacterium saburreum gene for 16S ribosomal RNA, paertial sequence, strain: JCM 11021	AB525414	1493	ENA	887325 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lachnoanaerobaculum saburreum DSM 3986	887325.3	wgs	PATRIC	887325 tax ID	*
[Ref.: #66792]	Lachnoanaerobaculum saburreum DSM 3986	649989950	draft	JGI IMG/M	887325 tax ID	*
[Ref.: #67770]	Lachnoanaerobaculum saburreum DSM 3986 DSM 3986	GCA_000185385	scaffold	GenBank	887325 tax ID
[Ref.: #66792]	Enterococcus faecalis 14EA1	GCA_003319355	scaffold	PATRIC	1351 tax ID	*

[Ref.: #1556]

GC-content

37 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #1556]

Culture collection no.

DSM 3986, ATCC 33271, CCUG 28089, CIP 105341, JCM 11021, VPI 11763

[Ref.: #20218]

Associated Passport(s) in StrainInfo

134914, 109090, 134913, 151108, 151109, 109091

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lachnoanaerobaculum gen. nov., a new genus in the Lachnospiraceae: characterization of Lachnoanaerobaculum umeaense gen. nov., sp. nov., isolated from the human small intestine, and Lachnoanaerobaculum orale sp. nov., isolated from saliva, and reclassification of Eubacterium saburreum (Prevot 1966) Holdeman and Moore 1970 as Lachnoanaerobaculum saburreum comb. nov.	Hedberg ME, Moore ERB, Svensson-Stadler L, Horstedt P, Baranov V, Hernell O, Wai SN, Hammarstrom S, Hammarstrom ML	Int J Syst Evol Microbiol	10.1099/ijs.0.033613-0	2012	*
Enzymology	Antimicrobial activity of Streptococcus salivarius K12 on bacteria involved in oral malodour.	Masdea L, Kulik EM, Hauser-Gerspach I, Ramseier AM, Filippi A, Waltimo T	Arch Oral Biol	10.1016/j.archoralbio.2012.02.011	2012	*
Phylogeny	Lachnoanaerobaculum gingivalis sp. nov., Isolated from Human Subgingival Dental Plaque of a Gingivitis Lesion.	Lim YK, Park SN, Jo E, Shin JH, Chang YH, Shin Y, Paek J, Kim H, Kook JK	Curr Microbiol	10.1007/s00284-019-01747-z	2019	*

References

#1556

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3986

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39269 ; Curators of the CIP;
#49092 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28089

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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