Name: Moryella indoligenes DSM 19659
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6373

Type strain:

Species: Moryella indoligenes

Culture col. no.: DSM 19659, CCUG 52648, CIP 109174, AIP 220.04

Strain history: CIP <- 2006, J.P. Carlier, Inst. Pasteur, Paris, France, Lachnospiraceae sp.: strain AIP 220.04 <- Le Mans Hosp., Le Mans, France

NCBI tax ID(s): 371674 (species)

SI-ID 302766

CCUG 52648, CIP 109174, DSM 19659

Section

Moryella indoligenes DSM 19659 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from intra-abdominal abscess.

Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Moryella*
	Species	**Moryella indoligenes**
	Full Scientific Name (LPSN)	Moryella indoligenes Carlier et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31954]	Gram stain	positive

[Ref.: #31954]	Cell length	0.8-1.7 µm

[Ref.: #31954]	Cell width	0.5-0.6 µm

[Ref.: #31954]	Cell shape	rod-shaped
[Ref.: #120092]	Cell shape	rod-shaped

[Ref.: #31954]	Motility	no
[Ref.: #120092]	Motility	no

[Ref.: #59618]

Incubation period

4 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8237]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8237]

Culture medium growth

[Ref.: #8237]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8237]

Culture medium composition

expand / minimize

[Ref.: #38197]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #38197]

Culture medium growth

[Ref.: #38197]

Culture medium composition

expand / minimize

[Ref.: #120092]

Culture medium

CIP Medium 20

[Ref.: #120092]

Culture medium growth

[Ref.: #120092]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8237]	growth	37 °C
[Ref.: #38197]	growth	37 °C
[Ref.: #59618]	growth	37 °C

[Ref.: #8237]	Temperature range	mesophilic
[Ref.: #38197]	Temperature range	mesophilic
[Ref.: #59618]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8237]	Oxygen tolerance	anaerobe
[Ref.: #31954]	Oxygen tolerance	anaerobe
[Ref.: #59618]	Oxygen tolerance	anaerobe

[Ref.: #31954]

Ability of spore formation

[Ref.: #31954]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #31954]	galactose ChEBI	+	carbon source
[Ref.: #31954]	glucose ChEBI	+	carbon source
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #31954]	maltose ChEBI	+	carbon source
[Ref.: #120092]	nitrate ChEBI	-	reduction
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #120092]	nitrite ChEBI	-	reduction
[Ref.: #31954]	ribose ChEBI	+	carbon source
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #31954]		indole ChEBI	yes
[Ref.: #120092]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #31954]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #120092]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #120092]	catalase	-	1.11.1.6
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #120092]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #120092]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120092]	oxidase	-
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #120092]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #8237]	12288	-	-	-	-	-	-	-	-	-	-	+/-	+/-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8237]	Sample type/isolated from	intra-abdominal abscess
[Ref.: #8237]	Country	France
[Ref.: #8237]	Country ISO 3 Code	FRA
[Ref.: #8237]	Continent	Europe

[Ref.: #59618]	Sample type/isolated from	Human abscess
[Ref.: #59618]	Sampling date	2004
[Ref.: #59618]	Geographic location (country and/or sea, region)	Le Mans
[Ref.: #59618]	Country	France
[Ref.: #59618]	Country ISO 3 Code	FRA
[Ref.: #59618]	Continent	Europe

[Ref.: #120092]	Sample type/isolated from	Human, Abscess
[Ref.: #120092]	Geographic location (country and/or sea, region)	Le Mans
[Ref.: #120092]	Country	France
[Ref.: #120092]	Country ISO 3 Code	FRA
[Ref.: #120092]	Continent	Europe
[Ref.: #120092]	Isolation date	2004
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Other	#Abdomen
#Host Body-Site	#Other	#Abscess

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ377947 (>99% sequence identity) for Fusobacterium naviforme from Microbeatlas

Aquatic Samples	280
Soil Samples	357
Animal Samples	41759
Plant Samples	102
Total Samples	42498

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8237]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #120092]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8237]	Moryella indoligenes strain AIP 220.04 16S ribosomal RNA gene, partial sequence	DQ377947	1374	ENA	371674 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Moryella indoligenes DSM 19659	2926471356	draft	JGI IMG/M	371674 tax ID	*

[Ref.: #8237]

GC-content

50.2 mol%

Availability in culture collections External links

[Ref.: #8237]

Culture collection no.

DSM 19659, CCUG 52648, CIP 109174, AIP 220.04

[Ref.: #75846]

SI-ID 302766

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Moryella indoligenes gen. nov., sp. nov., an anaerobic bacterium isolated from clinical specimens.	Carlier JP, K'ouas G, Han XY	Int J Syst Evol Microbiol	10.1099/ijs.0.64705-0	2007	*

References

#8237

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19659

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31954

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28210 (see below)

#38197 ; Curators of the CIP;
#59618 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52648

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75846

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID302766.1 )

#120092 Collection of Institut Pasteur ; Curators of the CIP; CIP 109174

#28210

IJSEM 725 2007 ( DOI 10.1099/ijs.0.64705-0 , PubMed 17392195 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Moryella indoligenes in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF