Name: Pseudobutyrivibrio xylanivorans DSM 10317
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6364

Type strain:

Species: Pseudobutyrivibrio xylanivorans

Culture col. no.: DSM 10317, NCFB 2399

Strain history: <- A. Willems, NCFB <- NIRD <- N. O. van Gylswyk, Bu21(RO3-21-08-7A)

NCBI tax ID(s): 185007 (species)

SI-ID 48810

DSM 10317, NCFB 2399

Other strains from Pseudobutyrivibrio xylanivorans

P. xylanivorans Mz 5, Mz5, DSM 14809, ATCC BAA-455, ... (type strain)
P. xylanivorans DSM 10296, NCFB 2397

Section

Pseudobutyrivibrio xylanivorans DSM 10317 is an anaerobe, mesophilic bacterium that was isolated from sheep rumen.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Pseudobutyrivibrio*
	Species	**Pseudobutyrivibrio xylanivorans**
	Full Scientific Name (LPSN)	Pseudobutyrivibrio xylanivorans Kopecný et al. 2003

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3902]

Culture medium

BUTYRIVIBRIO SP. MEDIUM (DSMZ Medium 704)

[Ref.: #3902]

Culture medium growth

[Ref.: #3902]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3902]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3902]			growth	37 °C

[Ref.: #3902]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3902]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3902]	Sample type/isolated from	sheep rumen
[Ref.: #3902]	Country	South Africa
[Ref.: #3902]	Country ISO 3 Code	ZAF
[Ref.: #3902]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Caprinae (Sheep/Goat)
#Host Body-Site	#Organ	#Rumen

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X89980 (>99% sequence identity) for Pseudobutyrivibrio ruminis subclade from Microbeatlas

Aquatic Samples	3
Soil Samples	8
Animal Samples	1864
Plant Samples	65
Total Samples	1940

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3902]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3902]	B.fibrisolvens DNA for ribosomal RNA gene (strain NCDO 2399)	X89980	1482	ENA	831 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudobutyrivibrio xylanivorans DSM 10317	GCA_900103015	contig	GenBank	185007 tax ID	*
[Ref.: #66792]	Pseudobutyrivibrio xylanivorans strain DSM 10317	185007.3	wgs	PATRIC	185007 tax ID	*
[Ref.: #66792]	Pseudobutyrivibrio xylanivorans DSM 10317	2593339222	draft	JGI IMG/M	185007 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudobutyrivibrio xylanivorans strain DSM 10317 PATRIC: 185007.3
[Ref.: #69480]	motile	yes	79.693	no
[Ref.: #69480]	gram-positive	yes	56.858	no
[Ref.: #69480]	anaerobic	yes	99.647	yes
[Ref.: #69480]	halophile	no	89.943	no
[Ref.: #69480]	spore-forming	yes	60.863	no
[Ref.: #69480]	glucose-util	yes	90.589	no
[Ref.: #69480]	flagellated	no	59.926	no
[Ref.: #69480]	thermophile	no	90.291	no
[Ref.: #69480]	aerobic	no	99.022	no
[Ref.: #69480]	glucose-ferment	yes	80.409	no

Availability in culture collections External links

[Ref.: #3902]

Culture collection no.

DSM 10317, NCFB 2399

[Ref.: #75837]

SI-ID 48810

References

#3902

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10317

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75837

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48810.1 )

* These data were automatically processed and therefore are not curated

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Pseudobutyrivibrio xylanivorans strain DSM 10317

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