Lachnospira multipara (DSM 3073, ATCC 19207, D32)

Name: Lachnospira multipara (DSM 3073, ATCC 19207, D32)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6359

Type strain

Strain Designation D32

Culture col. no. DSM 3073 ATCC 19207 D32

NCBI tax ID(s) 1282887 28051

Special Collections DSMZ

History DSMZ <- ATCC <- W.E.C. Moore <- K. Pittman <- M.P. Bryant and N. Small, D32

Links

Lachnospira multipara D32 is an anaerobe bacterium that was isolated from bovine rumen.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 36899

ATCC 19207,ATCC 12563,DSM 3073,VTT E-052784

@ref 20215

Last LPSN update 2026-05-29 08:26:23

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Lachnospira

Species Lachnospira multipara

Full scientific name Lachnospira multipara corrig. Bryant and Small 1956 (Approved Lists 1980)

Synonyms (1)

Lachnospira multiparus

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1292	RUMEN BACTERIA MEDIUM (DSMZ Medium 330)		Medium recipe at MediaDive	Name: RUMEN BACTERIA MEDIUM (DSMZ Medium 330) Composition: Na2CO3 4.0 g/l Trypticase peptone 2.0 g/l D-Glucose 0.5 g/l Yeast extract 0.5 g/l Maltose 0.5 g/l Cellobiose 0.5 g/l Starch 0.5 g/l Glycerol 0.5 g/l NaCl 0.456 g/l K2HPO4 0.3 g/l L-Cysteine HCl x H2O 0.25 g/l Na2S x 9 H2O 0.25 g/l (NH4)2SO4 0.228 g/l KH2PO4 0.228 g/l MgSO4 x 7 H2O 0.095 g/l CaCl2 x 2 H2O 0.0608 g/l Hemin 0.001 g/l Sodium resazurin 0.0005 g/l NaOH None Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
1292	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
1292	anaerobe
125438	anaerobe	90.654
125439	facultative anaerobe	94.492

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	L-lactaldehyde degradation	100	3 of 3
66794	starch degradation	100	10 of 10
66794	coenzyme A metabolism	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	aspartate and asparagine metabolism	100	9 of 9
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	vitamin B1 metabolism	92.31	12 of 13
66794	palmitate biosynthesis	90.91	20 of 22
66794	chorismate metabolism	88.89	8 of 9
66794	cellulose degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	valine metabolism	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	isoleucine metabolism	75	6 of 8
66794	ppGpp biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	NAD metabolism	72.22	13 of 18
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	Entner Doudoroff pathway	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	purine metabolism	67.02	63 of 94
66794	serine metabolism	66.67	6 of 9
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	UDP-GlcNAc biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	d-xylose degradation	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	alanine metabolism	62.07	18 of 29
66794	leucine metabolism	61.54	8 of 13
66794	hydrogen production	60	3 of 5
66794	myo-inositol biosynthesis	60	6 of 10
66794	pyrimidine metabolism	60	27 of 45
66794	threonine metabolism	60	6 of 10
66794	oxidative phosphorylation	59.34	54 of 91
66794	histidine metabolism	58.62	17 of 29
66794	propanol degradation	57.14	4 of 7
66794	proline metabolism	54.55	6 of 11
66794	polyamine pathway	52.17	12 of 23
66794	degradation of hexoses	50	9 of 18
66794	tryptophan metabolism	50	19 of 38
66794	ethanol fermentation	50	1 of 2
66794	non-pathway related	50	19 of 38
66794	butanoate fermentation	50	2 of 4
66794	sulfopterin metabolism	50	2 of 4
66794	citric acid cycle	50	7 of 14
66794	ketogluconate metabolism	50	4 of 8
66794	adipate degradation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	cysteine metabolism	50	9 of 18
66794	degradation of sugar acids	48	12 of 25
66794	urea cycle	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	pentose phosphate pathway	45.45	5 of 11
66794	metabolism of disaccharids	45.45	5 of 11
66794	lysine metabolism	45.24	19 of 42
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	degradation of sugar alcohols	43.75	7 of 16
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	isoprenoid biosynthesis	42.31	11 of 26
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	arginine metabolism	41.67	10 of 24
66794	glycine metabolism	40	4 of 10
66794	methylglyoxal degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	propionate fermentation	40	4 of 10
66794	degradation of pentoses	39.29	11 of 28
66794	lipid metabolism	38.71	12 of 31
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	cholesterol biosynthesis	36.36	4 of 11
66794	glutathione metabolism	35.71	5 of 14
66794	pantothenate biosynthesis	33.33	2 of 6
66794	nitrate assimilation	33.33	3 of 9
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	lipid A biosynthesis	33.33	3 of 9
66794	sulfate reduction	30.77	4 of 13
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	tyrosine metabolism	28.57	4 of 14
66794	ascorbate metabolism	27.27	6 of 22
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	arachidonic acid metabolism	22.22	4 of 18
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen

Isolation

1292

Sample typebovine rumen

Taxonmaps

69479

Global distribution of 16S sequence FR733699 (>99% sequence identity) for Lachnospira multipara subclade from Microbeatlas

Aquatic Samples	3
Soil Samples	290
Animal Samples	1805
Plant Samples	14
Total Samples	2112

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1292	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM42410v1 assembly for Lachnospira multipara ATCC 19207	scaffold	GCA_000424105	1282887.3	2524614802	1282887	72.16

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
1292	Lachnospira multipara partial 16S rRNA gene, type strain DSM3073T	FR733699	1518		1282887

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM42410v1 assembly for Lachnospira multipara ATCC 19207
NCBI: GCA_000424105

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.49	no
125439	gram_stain	BacteriaNetⓘ	variable	50.24	no
125439	motility	BacteriaNetⓘ	yes	57.88	no
125439	spore_formation	BacteriaNetⓘ	yes	54.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lachnospira multipara ATCC 19207 ATCC 19207
NCBI: GCA_000424105.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	65.44	no
125438	anaerobic	anaerobicⓘ	yes	90.65	yes
125438	aerobic	aerobicⓘ	no	96.96	no
125438	spore-forming	spore-formingⓘ	no	61.02	no
125438	thermophilic	thermophileⓘ	no	89.77	yes
125438	flagellated	motile2+ⓘ	yes	74.39	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Extensive set of 16S rRNA-based probes for detection of bacteria in human feces.	Harmsen HJ, Raangs GC, He T, Degener JE, Welling GW.	Appl Environ Microbiol	10.1128/aem.68.6.2982-2990.2002	2002
	Quantification of uncultured Ruminococcus obeum-like bacteria in human fecal samples by fluorescent in situ hybridization and flow cytometry using 16S rRNA-targeted probes.	Zoetendal EG, Ben-Amor K, Harmsen HJ, Schut F, Akkermans AD, de Vos WM.	Appl Environ Microbiol	10.1128/aem.68.9.4225-4232.2002	2002
Metabolism	Ammonia-hyperproducing bacteria from New Zealand ruminants.	Attwood GT, Klieve AV, Ouwerkerk D, Patel BK.	Appl Environ Microbiol	10.1128/aem.64.5.1796-1804.1998	1998
	In silico Screening Unveil the Great Potential of Ruminal Bacteria Synthesizing Lasso Peptides.	Sabino YNV, de Araujo KC, de Assis FGDV, Moreira SM, Lopes TDS, Mendes TAO, Huws SA, Mantovani HC.	Front Microbiol	10.3389/fmicb.2020.576738	2020
	Phylogenetic diversity of core rumen microbiota as described by cryo-ET.	Wimmer BH, Morais S, Zalk R, Mizrahi I, Medalia O.	Microlife	10.1093/femsml/uqad010	2023
Metabolism	Nitrogen fixation and nifH diversity in human gut microbiota.	Igai K, Itakura M, Nishijima S, Tsurumaru H, Suda W, Tsutaya T, Tomitsuka E, Tadokoro K, Baba J, Odani S, Natsuhara K, Morita A, Yoneda M, Greenhill AR, Horwood PF, Inoue J, Ohkuma M, Hongoh Y, Yamamoto T, Siba PM, Hattori M, Minamisawa K, Umezaki M.	Sci Rep	10.1038/srep31942	2016
Metabolism	Identification of bacteriocin-like inhibitors from rumen Streptococcus spp. and isolation and characterization of bovicin 255.	Whitford MF, McPherson MA, Forster RJ, Teather RM.	Appl Environ Microbiol	10.1128/aem.67.2.569-574.2001	2001

References

#1292	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3073
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lachnospira multipara (DSM 3073, ATCC 19207, D32)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000424105

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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