Dorea longicatena 111-35 is an anaerobe bacterium that was isolated from human feces.
anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Bacillota |
| Class Clostridia |
| Order Eubacteriales |
| Family Lachnospiraceae |
| Genus Dorea |
| Species Dorea longicatena |
| Full scientific name Dorea longicatena Taras et al. 2002 |
| BacDive ID | Other strains from Dorea longicatena (3) | Type strain |
|---|---|---|
| 158029 | D. longicatena f-DLO, DSM 107518 | |
| 158030 | D. longicatena H2_27, DSM 108154 | |
| 164023 | D. longicatena JCM 31334 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 5171 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | Medium recipe at MediaDive | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water |
| @ref | Ability | Type | PH | |
|---|---|---|---|---|
| 56709 | positive | growth | 7.2 |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 5171 | A31 | A1gamma m-Dpm-direct |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68380 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32A |
| 68380 | 16024 ChEBI | D-mannose | - | fermentation | from API rID32A |
| 68380 | 29985 ChEBI | L-glutamate | - | degradation | from API rID32A |
| 68380 | 17632 ChEBI | nitrate | - | reduction | from API rID32A |
| 68380 | 16634 ChEBI | raffinose | - | fermentation | from API rID32A |
| 68380 | 27897 ChEBI | tryptophan | - | energy source | from API rID32A |
| 68380 | 16199 ChEBI | urea | - | hydrolysis | from API rID32A |
| @ref | Chebi-ID | Metabolite | Production | |
|---|---|---|---|---|
| 68380 | 35581 ChEBI | indole | from API rID32A |
| @ref | Chebi-ID | Metabolite | Indole test | |
|---|---|---|---|---|
| 68380 | 35581 ChEBI | indole | - | from API rID32A |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68380 | alanine arylamidase | - | 3.4.11.2 | from API rID32A |
| 68380 | alkaline phosphatase | - | 3.1.3.1 | from API rID32A |
| 68380 | alpha-arabinosidase | + | 3.2.1.55 | from API rID32A |
| 68380 | alpha-fucosidase | - | 3.2.1.51 | from API rID32A |
| 68380 | alpha-galactosidase | - | 3.2.1.22 | from API rID32A |
| 68380 | arginine dihydrolase | - | 3.5.3.6 | from API rID32A |
| 68380 | beta-galactosidase | + | 3.2.1.23 | from API rID32A |
| 68380 | beta-Galactosidase 6-phosphate | - | from API rID32A | |
| 68380 | beta-glucosidase | + | 3.2.1.21 | from API rID32A |
| 68380 | beta-glucuronidase | - | 3.2.1.31 | from API rID32A |
| 68380 | glutamate decarboxylase | - | 4.1.1.15 | from API rID32A |
| 68380 | glutamyl-glutamate arylamidase | - | from API rID32A | |
| 68380 | glycin arylamidase | - | from API rID32A | |
| 68380 | histidine arylamidase | - | from API rID32A | |
| 68380 | L-arginine arylamidase | - | from API rID32A | |
| 68380 | leucine arylamidase | - | 3.4.11.1 | from API rID32A |
| 68380 | leucyl glycin arylamidase | - | 3.4.11.1 | from API rID32A |
| 68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32A |
| 68380 | phenylalanine arylamidase | - | from API rID32A | |
| 68380 | proline-arylamidase | + | 3.4.11.5 | from API rID32A |
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32A |
| 68380 | serine arylamidase | - | from API rID32A | |
| 68380 | tryptophan deaminase | - | 4.1.99.1 | from API rID32A |
| 68380 | tyrosine arylamidase | - | from API rID32A | |
| 68380 | urease | - | 3.5.1.5 | from API rID32A |
| @ref | URE | ADH (Arg) | alpha GAL | beta GAL | beta-Galactosidase 6-phosphatebeta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta-N-Acetyl-beta-glucosaminidasebeta NAG | MNE | RAF | GDC | alpha FUC | Reduction of nitrateNIT | IND | PAL | L-arginine arylamidaseArgA | ProA | LGA | Phenylalanine arylamidasePheA | Leucine arylamidaseLeuA | PyrA | Tyrosine arylamidaseTyrA | Alanine arylamidaseAlaA | Glycin arylamidaseGlyA | Histidine arylamidaseHisA | Glutamyl-glutamate arylamidaseGGA | Serine arylamidaseSerA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5171 | - | - | - | + | - | +/- | + | + | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | |
| 5171 | - | - | - | + | - | +/- | + | + | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | |
| 5171 | - | - | - | + | - | - | + | + | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | - | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Global distribution of 16S sequence LC037228 (>99% sequence identity) for Dorea longicatena subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM2515008v1 assembly for Dorea longicatena DSM 13814 | complete | 88431 | 97.13 | ||||
| 66792 | ASM15406v1 assembly for Dorea longicatena DSM 13814 | scaffold | 411462 | 66.84 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 5171 | 45.6 | high performance liquid chromatography (HPLC) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 58.70 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 75.20 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 67.60 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | anaerobe | 99.80 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 81.06 | no |
| 125438 | anaerobic | anaerobicⓘ | yes | 90.79 | no |
| 125438 | aerobic | aerobicⓘ | no | 97.25 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 61.99 | no |
| 125438 | thermophilic | thermophileⓘ | no | 93.56 | no |
| 125438 | flagellated | motile2+ⓘ | no | 86.97 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
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| Production of deoxycholic acid by low-abundant microbial species is associated with impaired glucose metabolism. | Wahlstrom A, Brumbaugh A, Sjoland W, Olsson L, Wu H, Henricsson M, Lundqvist A, Makki K, Hazen SL, Bergstrom G, Marschall HU, Fischbach MA, Backhed F. | Nat Commun | 10.1038/s41467-024-48543-3 | 2024 | ||
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| Genetics | Ecology- and genome-based identification of the Bifidobacterium adolescentis prototype of the healthy human gut microbiota. | Argentini C, Lugli GA, Tarracchini C, Fontana F, Mancabelli L, Viappiani A, Anzalone R, Angelini L, Alessandri G, Bianchi MG, Taurino G, Bussolati O, Milani C, van Sinderen D, Turroni F, Ventura M. | Appl Environ Microbiol | 10.1128/aem.02014-23 | 2024 | |
| Development of culture methods capable of culturing a wide range of predominant species of intestinal bacteria. | Hirano R, Nishita I, Nakai R, Bito A, Sasabe R, Kurihara S. | Front Cell Infect Microbiol | 10.3389/fcimb.2023.1056866 | 2023 | ||
| The microbiome diversifies long- to short-chain fatty acid-derived N-acyl lipids. | Mannochio-Russo H, Charron-Lamoureux V, van Faassen M, Lamichhane S, Goncalves Nunes WD, Deleray V, Ayala AV, Tanaka Y, Patan A, Vittali K, Rajkumar P, El Abiead Y, Zhao HN, Gomes PWP, Mohanty I, Lee C, Sund A, Sharma M, Liu Y, Pattynama D, Walker GT, Norton GJ, Khatib L, Andalibi MS, Wang CX, Ellis RJ, Moore DJ, Iudicello JE, Franklin D, Letendre S, Chin L, Walker C, Renwick S, Zemlin J, Meehan MJ, Song X, Kasper D, Burcham Z, Kim JJ, Kadakia S, Raffatellu M, Bode L, Chu H, Zengler K, Wang M, Siegel D, Knight R, Dorrestein PC. | Cell | 10.1016/j.cell.2025.05.015 | 2025 | ||
| Pathogenicity | Visceral adiposity in postmenopausal women is associated with a pro-inflammatory gut microbiome and immunogenic metabolic endotoxemia. | Gaber M, Wilson AS, Millen AE, Hovey KM, LaMonte MJ, Wactawski-Wende J, Ochs-Balcom HM, Cook KL. | Microbiome | 10.1186/s40168-024-01901-1 | 2024 | |
| Colorectal cancer-associated bacteria are broadly distributed in global microbiomes and drivers of precancerous change. | Minot SS, Li N, Srinivasan H, Ayers JL, Yu M, Koester ST, Stangis MM, Dominitz JA, Halberg RB, Grady WM, Dey N. | Sci Rep | 10.1038/s41598-024-70702-1 | 2024 | ||
| Pathogenicity | Quantifying the varying harvest of fermentation products from the human gut microbiota. | Arnoldini M, Sharma R, Moresi C, Chure G, Chabbey J, Slack E, Cremer J. | Cell | 10.1016/j.cell.2025.07.005 | 2025 | |
| Lipid complexation reduces rice starch digestibility and boosts short-chain fatty acid production via gut microbiota. | Shen Y, An Z, Huyan Z, Shu X, Wu D, Zhang N, Pellegrini N, Rubert J. | NPJ Sci Food | 10.1038/s41538-023-00230-1 | 2023 | ||
| Metabolism | Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome. | Wang M, Osborn LJ, Jain S, Meng X, Weakley A, Yan J, Massey WJ, Varadharajan V, Horak A, Banerjee R, Allende DS, Chan ER, Hajjar AM, Wang Z, Dimas A, Zhao A, Nagashima K, Cheng AG, Higginbottom S, Hazen SL, Brown JM, Fischbach MA. | Cell | 10.1016/j.cell.2023.05.037 | 2023 | |
| Metabolism | Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria. | Wang Z, Tauzin AS, Laville E, Tedesco P, Letisse F, Terrapon N, Lepercq P, Mercade M, Potocki-Veronese G. | mSphere | 10.1128/msphere.00771-19 | 2020 | |
| Metabolism | Roles of human colonic bacteria in pectin utilization and associated cross-feeding networks revealed using synthetic co-cultures. | Solvang M, Farquharson FM, Horgan G, Pisano S, Holck J, Zeuner B, Russell WR, Louis P. | Microbiology (Reading) | 10.1099/mic.0.001559 | 2025 | |
| Genetics | Metagenome-Scale Metabolic Network Suggests Folate Produced by Bifidobacterium longum Might Contribute to High-Fiber-Diet-Induced Weight Loss in a Prader-Willi Syndrome Child. | Xiang B, Zhao L, Zhang M. | Microorganisms | 10.3390/microorganisms9122493 | 2021 | |
| Carotenoid productivity in human intestinal bacteria Eubacterium limosum and Leuconostoc mesenteroides with functional analysis of their carotenoid biosynthesis genes. | Matsumoto W, Takemura M, Nanaura H, Ami Y, Maoka T, Shindo K, Kurihara S, Misawa N. | Eng Microbiol | 10.1016/j.engmic.2024.100147 | 2024 | ||
| Metabolism | Microbial short-chain fatty acids modulate CD8+ T cell responses and improve adoptive immunotherapy for cancer. | Luu M, Riester Z, Baldrich A, Reichardt N, Yuille S, Busetti A, Klein M, Wempe A, Leister H, Raifer H, Picard F, Muhammad K, Ohl K, Romero R, Fischer F, Bauer CA, Huber M, Gress TM, Lauth M, Danhof S, Bopp T, Nerreter T, Mulder IE, Steinhoff U, Hudecek M, Visekruna A. | Nat Commun | 10.1038/s41467-021-24331-1 | 2021 | |
| Microbiome-encoded bile acid metabolism modulates colonic transit times. | Li N, Koester ST, Lachance DM, Dutta M, Cui JY, Dey N. | iScience | 10.1016/j.isci.2021.102508 | 2021 | ||
| Metabolism | Functional metagenomics reveals novel pathways of prebiotic breakdown by human gut bacteria. | Cecchini DA, Laville E, Laguerre S, Robe P, Leclerc M, Dore J, Henrissat B, Remaud-Simeon M, Monsan P, Potocki-Veronese G. | PLoS One | 10.1371/journal.pone.0072766 | 2013 | |
| Design, construction, and in vivo augmentation of a complex gut microbiome. | Cheng AG, Ho PY, Aranda-Diaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA. | Cell | 10.1016/j.cell.2022.08.003 | 2022 | ||
| Metabolism | SIMMER employs similarity algorithms to accurately identify human gut microbiome species and enzymes capable of known chemical transformations. | Bustion AE, Nayak RR, Agrawal A, Turnbaugh PJ, Pollard KS. | Elife | 10.7554/elife.82401 | 2023 | |
| Metabolism | Paneth Cell-Derived Lysozyme Defines the Composition of Mucolytic Microbiota and the Inflammatory Tone of the Intestine. | Yu S, Balasubramanian I, Laubitz D, Tong K, Bandyopadhyay S, Lin X, Flores J, Singh R, Liu Y, Macazana C, Zhao Y, Beguet-Crespel F, Patil K, Midura-Kiela MT, Wang D, Yap GS, Ferraris RP, Wei Z, Bonder EM, Haggblom MM, Zhang L, Douard V, Verzi MP, Cadwell K, Kiela PR, Gao N. | Immunity | 10.1016/j.immuni.2020.07.010 | 2020 | |
| Metabolism | Discovery of Azurin-Like Anticancer Bacteriocins from Human Gut Microbiome through Homology Modeling and Molecular Docking against the Tumor Suppressor p53. | Nguyen C, Nguyen VD. | Biomed Res Int | 10.1155/2016/8490482 | 2016 | |
| Functional Comparison of Bacteria from the Human Gut and Closely Related Non-Gut Bacteria Reveals the Importance of Conjugation and a Paucity of Motility and Chemotaxis Functions in the Gut Environment. | Dobrijevic D, Abraham AL, Jamet A, Maguin E, van de Guchte M. | PLoS One | 10.1371/journal.pone.0159030 | 2016 | ||
| Metabolism | Methotrexate impacts conserved pathways in diverse human gut bacteria leading to decreased host immune activation. | Nayak RR, Alexander M, Deshpande I, Stapleton-Gray K, Rimal B, Patterson AD, Ubeda C, Scher JU, Turnbaugh PJ. | Cell Host Microbe | 10.1016/j.chom.2020.12.008 | 2021 | |
| Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes. | Dos Santos PC, Fang Z, Mason SW, Setubal JC, Dixon R. | BMC Genomics | 10.1186/1471-2164-13-162 | 2012 | ||
| Metabolism | Intracellular glycogen accumulation by human gut commensals as a niche adaptation trait. | Esteban-Torres M, Ruiz L, Rossini V, Nally K, van Sinderen D. | Gut Microbes | 10.1080/19490976.2023.2235067 | 2023 | |
| Phylogeny | Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota. | Martinez I, Wallace G, Zhang C, Legge R, Benson AK, Carr TP, Moriyama EN, Walter J. | Appl Environ Microbiol | 10.1128/aem.00380-09 | 2009 | |
| Metabolism | The Stringent Response Determines the Ability of a Commensal Bacterium to Survive Starvation and to Persist in the Gut. | Schofield WB, Zimmermann-Kogadeeva M, Zimmermann M, Barry NA, Goodman AL. | Cell Host Microbe | 10.1016/j.chom.2018.06.002 | 2018 | |
| Spatial organization of a model 15-member human gut microbiota established in gnotobiotic mice. | Mark Welch JL, Hasegawa Y, McNulty NP, Gordon JI, Borisy GG. | Proc Natl Acad Sci U S A | 10.1073/pnas.1711596114 | 2017 | ||
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| Metabolism | Alternative spermidine biosynthetic route is critical for growth of Campylobacter jejuni and is the dominant polyamine pathway in human gut microbiota. | Hanfrey CC, Pearson BM, Hazeldine S, Lee J, Gaskin DJ, Woster PM, Phillips MA, Michael AJ. | J Biol Chem | 10.1074/jbc.m111.307835 | 2011 | |
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| Bioinformatic characterization of the trimeric intracellular cation-specific channel protein family. | Silverio AL, Saier MH. | J Membr Biol | 10.1007/s00232-011-9364-8 | 2011 | ||
| Noncellulosomal cohesin- and dockerin-like modules in the three domains of life. | Peer A, Smith SP, Bayer EA, Lamed R, Borovok I. | FEMS Microbiol Lett | 10.1111/j.1574-6968.2008.01420.x | 2009 | ||
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| Imbalanced dietary intake alters the colonic microbial profile in growing rats. | Jung TH, Han KS. | PLoS One | 10.1371/journal.pone.0253959 | 2021 | ||
| Metabolism | Gut microbial carbohydrate metabolism contributes to insulin resistance. | Takeuchi T, Kubota T, Nakanishi Y, Tsugawa H, Suda W, Kwon AT, Yazaki J, Ikeda K, Nemoto S, Mochizuki Y, Kitami T, Yugi K, Mizuno Y, Yamamichi N, Yamazaki T, Takamoto I, Kubota N, Kadowaki T, Arner E, Carninci P, Ohara O, Arita M, Hattori M, Koyasu S, Ohno H. | Nature | 10.1038/s41586-023-06466-x | 2023 | |
| Phylogeny | Reclassification of Eubacterium formicigenerans Holdeman and Moore 1974 as Dorea formicigenerans gen. nov., comb. nov., and description of Dorea longicatena sp. nov., isolated from human faeces. | Taras D, Simmering R, Collins MD, Lawson PA, Blaut M | Int J Syst Evol Microbiol | 10.1099/00207713-52-2-423 | 2002 |
| #5171 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13814 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #56709 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45247 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68380 | Automatically annotated from API rID32A . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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