Name: Dorea longicatena 111-35
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6355

Type strain:

Species: Dorea longicatena

Strain Designation: 111-35

Culture col. no.: DSM 13814, CCUG 45247, JCM 11232

Strain history: D. Taras 111-35.

NCBI tax ID(s): 411462 (strain), 88431 (species)

SI-ID 100631

CCUG 45247, DSM 13814, JCM 11232, VTT E-052788

Special Collections

Other strains from Dorea longicatena

Section

Dorea longicatena 111-35 is an anaerobe, mesophilic bacterium that was isolated from human feces.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Dorea*
	Species	**Dorea longicatena**
	Full Scientific Name (LPSN)	Dorea longicatena Taras et al. 2002

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5171]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #5171]

Culture medium growth

[Ref.: #5171]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5171]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5171]	growth	37 °C
[Ref.: #56709]	growth	37 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #56709]			growth	7.2

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5171]	Oxygen tolerance	anaerobe
[Ref.: #56709]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %90.787

[Ref.: #5171]	Murein short key	A31
[Ref.: #5171]	Murein types	A1gamma m-Dpm-direct

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #5171]	13949	-	-	-	+	-	+/-	+	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-
[Ref.: #5171]	13948	-	-	-	+	-	+/-	+	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-
[Ref.: #5171]	13947	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5171]	Sample type/isolated from	human feces
[Ref.: #5171]	Country	Germany
[Ref.: #5171]	Country ISO 3 Code	DEU
[Ref.: #5171]	Continent	Europe

[Ref.: #56709]	Sample type/isolated from	Human feces,healthy German individual
[Ref.: #56709]	Sampling date	1998-07-01
[Ref.: #56709]	Geographic location (country and/or sea, region)	Rehbrücke
[Ref.: #56709]	Country	Germany
[Ref.: #56709]	Country ISO 3 Code	DEU
[Ref.: #56709]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC037228 (>99% sequence identity) for Dorea longicatena subclade from Microbeatlas

Aquatic Samples	3696
Soil Samples	510
Animal Samples	99499
Plant Samples	248
Total Samples	103953

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5171]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Dorea longicatena gene for 16S ribosomal RNA, partial sequence, strain: JCM 11232	LC037228	1493	GenBank ENA	88431 tax ID
[Ref.: #5171]	Eubacterium sp. III-35 16S rRNA gene	AJ132842	1345	GenBank ENA	88431 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dorea longicatena DSM 13814	411462.6	wgs	PATRIC	411462 tax ID	*
[Ref.: #66792]	Dorea longicatena DSM 13814	640963046	draft	JGI IMG/M	411462 tax ID	*
[Ref.: #66792]	Dorea longicatena DSM 13814	GCA_000154065	scaffold	GenBank ENA	411462 tax ID	*
[Ref.: #66792]	Dorea longicatena DSM 13814	GCA_025150085	complete	GenBank ENA	88431 tax ID	*
[Ref.: #66792]	Dorea longicatena strain DSM 13814	88431.1235	complete	PATRIC	88431 tax ID	*

[Ref.: #5171]

GC-content

45.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Dorea longicatena DSM 13814 DSM 13814 NCBI: GCA_000154065.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	72	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dorea longicatena DSM 13814 NCBI: GCA_025150085.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	81.063	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	90.787	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.254	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	61.991	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.564	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86.971	no

Availability in culture collections External links

[Ref.: #5171]

Culture collection no.

DSM 13814, CCUG 45247, JCM 11232

[Ref.: #75828]

SI-ID 100631

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Eubacterium formicigenerans Holdeman and Moore 1974 as Dorea formicigenerans gen. nov., comb. nov., and description of Dorea longicatena sp. nov., isolated from human faeces.	Taras D, Simmering R, Collins MD, Lawson PA, Blaut M	Int J Syst Evol Microbiol	10.1099/00207713-52-2-423	2002	*

References

#5171

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13814

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#56709 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45247

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75828

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100631.1 )

* These data were automatically processed and therefore are not curated

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Dorea longicatena DSM 13814 DSM 13814

Dorea longicatena DSM 13814

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