Name: Butyrivibrio fibrisolvens D1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6342

Type strain:

Species: Butyrivibrio fibrisolvens

Strain Designation: D1

Culture col. no.: DSM 3071, ATCC 19171, CCUG 35459, JCM 6563, NCIMB 702221

Strain history: Y. Benno <-- T. Mitsuoka <-- ATCC 19171 <-- I. M. Robinson.

NCBI tax ID(s): 1121131 (strain), 831 (species)

SI-ID 36883

ATCC 19171, ATCC 12560, CCUG 35459, NCDO 2221, NCFB 2221, DSM 3071

Section

Butyrivibrio fibrisolvens D1 is an anaerobe, mesophilic bacterium that was isolated from bovine rumen.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Lachnospiraceae*
	Genus	*Butyrivibrio*
	Species	**Butyrivibrio fibrisolvens**
	Full Scientific Name (LPSN)	Butyrivibrio fibrisolvens Bryant and Small 1956 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1290]

Culture medium

RUMEN BACTERIA MEDIUM (DSMZ Medium 330)

[Ref.: #1290]

Culture medium growth

[Ref.: #1290]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1290]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #1290]	growth	37 °C
[Ref.: #52745]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #1290]	Temperature range	mesophilic
[Ref.: #52745]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1290]	Oxygen tolerance	anaerobe
[Ref.: #52745]	Oxygen tolerance	anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym, API rID32A
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym, API rID32A
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API rID32A
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	+		* from API rID32A
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API rID32A
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym, API rID32A
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	+		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym, API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API rID32A
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #52745]	4919	-	-	+	+	+	+	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #52745]	1399	-	+	+	+	-	-	-	-	-	-	+	-	+	+	+	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1290]	Sample type/isolated from	bovine rumen

[Ref.: #52745]	Sample type/isolated from	Bovine rumen

[Ref.: #67770]	Sample type/isolated from	Rumen contents
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X89970 (>99% sequence identity) for Butyrivibrio fibrisolvens subclade from Microbeatlas

Aquatic Samples	72
Soil Samples	256
Animal Samples	8563
Plant Samples	518
Total Samples	9409

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1290]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Butyrivibrio fibrisolvens gene for 16S ribosomal RNA, partial sequence, strain: JCM 6563	AB971808	1506	ENA	831 tax ID
[Ref.: #1290]	Butyrivibrio fibrisolvens ATCC 19171 16S rRNA gene	U41172	1477	ENA	831 tax ID
[Ref.: #20218]	B.fibrisolvens DNA for ribosomal RNA gene (strain NCDO 2221)	X89970	1481	ENA	831 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Butyrivibrio fibrisolvens DSM 3071	GCA_900129945	contig	GenBank	1121131 tax ID
[Ref.: #66792]	Butyrivibrio fibrisolvens DSM 3071	1121131.4	wgs	PATRIC	1121131 tax ID	*
[Ref.: #66792]	Butyrivibrio fibrisolvens DSM 3071	2585428068	draft	JGI IMG/M	1121131 tax ID	*

[Ref.: #67770]

GC-content

41.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Butyrivibrio fibrisolvens DSM 3071 PATRIC: 1121131.4
[Ref.: #69480]	motile	yes	84.829	no
[Ref.: #69480]	flagellated	no	58.998	no
[Ref.: #69480]	gram-positive	yes	68.392	no
[Ref.: #69480]	anaerobic	yes	99.28	yes
[Ref.: #69480]	aerobic	no	98.582	no
[Ref.: #69480]	halophile	no	93.549	no
[Ref.: #69480]	spore-forming	yes	75.591	no
[Ref.: #69480]	thermophile	no	95.046	yes
[Ref.: #69480]	glucose-util	yes	88.62	no
[Ref.: #69480]	glucose-ferment	yes	76.888	no

Availability in culture collections External links

[Ref.: #1290]

Culture collection no.

DSM 3071, ATCC 19171, CCUG 35459, JCM 6563, NCIMB 702221

[Ref.: #75816]

SI-ID 36883

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Characterization and transcription of the genes involved in butyrate production in Butyrivibrio fibrisolvens type I and II strains.	Asanuma N, Ishiwata M, Yoshii T, Kikuchi M, Nishina Y, Hino T	Curr Microbiol	10.1007/s00284-005-4477-x	2005	*
Biotechnology	Presence of Butyrivibrio fibrisolvens in the digestive tract of dogs and cats, and its contribution to butyrate production.	Asanuma N, Kawato M, Hino T	J Gen Appl Microbiol	10.2323/jgam.47.313	2001	*
Metabolism	Effects of ammonia and amino acids on the growth and proteolytic activity of three species of rumen bacteria: Prevotella albensis, Butyrivibrio fibrisolvens, and Streptococcus bovis.	Sales M, Lucas F, Blanchart G	Curr Microbiol	10.1007/s002840010074	2000	*
Phylogeny	16S rDNA analysis of Butyrivibrio fibrisolvens: phylogenetic position and relation to butyrate-producing anaerobic bacteria from the rumen of white-tailed deer.	Forster RJ, Teather RM, Gong J, Deng SJ	Lett Appl Microbiol	10.1111/j.1472-765x.1996.tb00069.x	1996	*
Metabolism	Fermentation of glucose and xylose in ruminal strains of Butyrivibrio fibrisolvens.	Marounek M, Petr O	Lett Appl Microbiol	10.1111/j.1472-765x.1995.tb01058.x	1995	*
	Utilization of Glucose and Xylose in Ruminal Strains of Butyrivibrio fibrisolvens.	Marounek M, Kopecny J	Appl Environ Microbiol	10.1128/aem.60.2.738-739.1994	1994	*

References

#1290

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3071

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#52745 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 35459

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75816

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36883.1 )

* These data were automatically processed and therefore are not curated

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Butyrivibrio fibrisolvens DSM 3071

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