Name: Jonesia denitrificans 55134
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6314

Type strain:

Species: Jonesia denitrificans

Strain Designation: 55134

Culture col. no.: DSM 20603, ATCC 14870, CIP 55134, NCTC 10816, CCUG 15532, CIP 55.134, JCM 11481, BCRC 15368, CCM 4048, CECT 918, IFM 10529, IFO 15587, IMSNU 21281, NBRC 15587

Strain history: CIP 55.134 <-- R. Sohier L26.

NCBI tax ID(s): 471856 (strain), 43674 (species)

Section

Jonesia denitrificans 55134 is an anaerobe, mesophilic bacterium that builds an aerial mycelium and was isolated from boiled ox blood.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Jonesiaceae*
	Genus	*Jonesia*
	Species	**Jonesia denitrificans**
	Full Scientific Name (PNU)	Jonesia denitrificans (Prévot 1961) Rocourt et al. 1987

Synonym

Listeria denitrificans

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

positive Confidence in %100

[Ref.: #18763]	Incubation period	10-14 days
[Ref.: #18763]	Cultivation medium used	ISP 2

[Ref.: #18763]	Incubation period	10-14 days
[Ref.: #18763]	Cultivation medium used	ISP 3

[Ref.: #18763]	Incubation period	10-14 days
[Ref.: #18763]	Cultivation medium used	ISP 4

[Ref.: #18763]	Incubation period	10-14 days
[Ref.: #18763]	Cultivation medium used	ISP 5

[Ref.: #18763]	Multicellular complex forming ability	no
[Ref.: #18763]	Medium Name (multicellularity)	ISP 2

[Ref.: #18763]	Multicellular complex forming ability	no
[Ref.: #18763]	Medium Name (multicellularity)	ISP 3

[Ref.: #18763]	Multicellular complex forming ability	no
[Ref.: #18763]	Medium Name (multicellularity)	ISP 4

[Ref.: #18763]	Multicellular complex forming ability	yes
[Ref.: #18763]	Multicellular complex name	Aerial Mycelium
[Ref.: #18763]	Multicellular complex color	White
[Ref.: #18763]	Medium Name (multicellularity)	ISP 5

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8951]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8951]

Culture medium growth

[Ref.: #8951]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #8951]

Culture medium composition

expand / minimize

[Ref.: #8951]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #8951]

Culture medium growth

[Ref.: #8951]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #8951]

Culture medium composition

expand / minimize

[Ref.: #18763]

Culture medium

ISP 2

[Ref.: #18763]

Culture medium growth

[Ref.: #18763]

Culture medium composition

expand / minimize

[Ref.: #18763]

Culture medium

ISP 3

[Ref.: #18763]

Culture medium growth

[Ref.: #18763]

Culture medium composition

expand / minimize

[Ref.: #18763]

Culture medium

ISP 4

[Ref.: #18763]

Culture medium growth

[Ref.: #18763]

Culture medium composition

expand / minimize

[Ref.: #18763]

Culture medium

ISP 5

[Ref.: #18763]

Culture medium growth

[Ref.: #18763]

Culture medium composition

expand / minimize

[Ref.: #37598]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #37598]

Culture medium growth

[Ref.: #37598]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8951]	growth	37 °C
[Ref.: #18763]	optimum	37 °C
[Ref.: #37598]	growth	30 °C
[Ref.: #46273]	growth	37 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #8951]	Temperature range	mesophilic
[Ref.: #18763]	Temperature range	mesophilic
[Ref.: #37598]	Temperature range	mesophilic
[Ref.: #46273]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #46273]	Oxygen tolerance	anaerobe
[Ref.: #46273]	Oxygen tolerance	microaerophile

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.988

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18763]		NaCl		maximum	7.5	%

[Ref.: #8951]	Murein short key	A11.48
[Ref.: #8951]	Murein types	A4alpha L-Lys-L-Ser-D-Glu

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18763]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18763]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18763]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18763]	glucose ChEBI	-
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18763]	mannitol ChEBI	-
[Ref.: #18763]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18763]	raffinose ChEBI	-
[Ref.: #18763]	rhamnose ChEBI	-
[Ref.: #18763]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18763]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite
[Ref.: #68368]	acetoin ChEBI	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	* from API 20E
[Ref.: #68368]	indole ChEBI	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #46273]

Fatty acid	Percentage	ECL
C15:0 ANTEISO	49.6	14.711
C16:0	14.7	16
C16:0 iso	8.7	15.626
C17:0 anteiso	4.8	16.722
C15:0 ISO	4.6	14.621
C14:0	4.5	14
C14:0 ISO	3.5	13.618
C15:1 ANTEISO A	3	14.526
C13:0 ANTEISO	2	12.701
C18:2 ω6,9c/C18:0 ANTE	1.8	17.724
C18:1 ω9c	1.3	17.769
C15:0	0.7	15
C18:0	0.4	18
C17:0 iso	0.4	16.629

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18763]	239	+	-	-	-	+	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18763]	328	not determinedn.d.	-	-	+	-	+	-	-	-	-	+	-	+	+	-	+	+	+	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	methylglyoxal degradation	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	pyrimidine metabolism	77.78	35 of 45
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	peptidoglycan biosynthesis	73.33	11 of 15
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	Entner Doudoroff pathway	70	7 of 10
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	purine metabolism	67.02	63 of 94
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	alanine metabolism	65.52	19 of 29
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	oxidative phosphorylation	62.64	57 of 91
[Ref.: #66794]	gluconeogenesis	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	glutamate and glutamine metabolism	60.71	17 of 28
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	lipid metabolism	58.06	18 of 31
[Ref.: #66794]	methionine metabolism	57.69	15 of 26
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	leucine metabolism	53.85	7 of 13
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	histidine metabolism	48.28	14 of 29
[Ref.: #66794]	tryptophan metabolism	47.37	18 of 38
[Ref.: #66794]	degradation of pentoses	46.43	13 of 28
[Ref.: #66794]	arginine metabolism	45.83	11 of 24
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	non-pathway related	44.74	17 of 38
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	d-mannose degradation	44.44	4 of 9
[Ref.: #66794]	degradation of sugar acids	44	11 of 25
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	lysine metabolism	40.48	17 of 42
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	propionate fermentation	40	4 of 10
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	tyrosine metabolism	35.71	5 of 14
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	formaldehyde oxidation	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	urea cycle	30.77	4 of 13
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	29.41	5 of 17
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	ubiquinone biosynthesis	28.57	2 of 7
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	25	3 of 12
[Ref.: #66794]	dTDPLrhamnose biosynthesis	25	2 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8951]	Sample type/isolated from	boiled ox blood

[Ref.: #46273]	Sample type/isolated from	Boiled ox blood
[Ref.: #46273]	Country	France
[Ref.: #46273]	Country ISO 3 Code	FRA
[Ref.: #46273]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Boiled ox blood
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X83811 (>99% sequence identity) for Jonesia denitrificans subclade from Microbeatlas

Aquatic Samples	156
Soil Samples	236
Animal Samples	1091
Plant Samples	57
Total Samples	1540

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8951]	Pathogenicity (animal)	yes
[Ref.: #8951]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #18763]	Biosafety level	2	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	J.denitrificans 16S rRNA gene	X83811	1420	ENA	471856 tax ID	*
[Ref.: #20218]	Jonesia denitrificans 16S rRNA gene	X78420	1514	ENA	471856 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Jonesia denitrificans DSM 20603, complete genome	CP001706		ENA	471856 tax ID
[Ref.: #67770]	Jonesia denitrificans strain NCTC10816 genome assembly, chromosome: 1	LS483423		ENA	43674 tax ID
[Ref.: #66792]	Jonesia denitrificans DSM 20603	471856.5	complete	PATRIC	471856 tax ID	*
[Ref.: #66792]	Jonesia denitrificans strain FDAARGOS 1440 strain Not applicable	43674.5	complete	PATRIC	43674 tax ID	*
[Ref.: #66792]	Jonesia denitrificans strain NCTC10816	43674.4	complete	PATRIC	43674 tax ID	*
[Ref.: #66792]	Jonesia denitrificans NCTC 10816	2808606808	complete	JGI IMG/M	43674 tax ID	*

[Ref.: #8951]	GC-content	57.0 mol%
[Ref.: #67770]	GC-content	58.42 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Jonesia denitrificans DSM 20603 PATRIC: 471856.5
[Ref.: #69480]	gram-positive	yes	100	yes
[Ref.: #69480]	spore-forming	no	99.988	yes
[Ref.: #69480]	anaerobic	no	93.366	no
[Ref.: #69480]	thermophile	no	99.472	no
[Ref.: #69480]	motile	no	59.738	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Jonesia denitrificans DSM 20603 PATRIC: 471856.5
[Ref.: #69481]	spore-forming	no	82	no

Availability in culture collections External links

[Ref.: #8951]

Culture collection no.

DSM 20603, ATCC 14870, CIP 55134, NCTC 10816, CCUG 15532, CIP 55.134, JCM 11481, BCRC 15368, CCM 4048, CECT 918, IFM 10529, IFO 15587, IMSNU 21281, NBRC 15587

[Ref.: #20218]

Associated Passport(s) in StrainInfo

136844, 97877, 97878, 97880

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134).	Pukall R, Gehrich-Schroter G, Lapidus A, Nolan M, Glavina Del Rio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Copeland A, Saunders E, Brettin T, Detter JC, Bruce D, Goodwin L, Pati A, Ivanova N, Mavromatis K, Ovchinnikova G, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Han C	Stand Genomic Sci	10.4056/sigs.41646	2009	*
	The Murein Types of Listeria grayi, Listeria murrayi and Listeria denitrificans.	Fiedler F, Seger J	Syst Appl Microbiol	10.1016/S0723-2020(83)80002-2	1983	*

References

#8951

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20603

#18763

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37598 ; Curators of the CIP;
#46273 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15532

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Search for species Jonesia denitrificans in external resources:
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Jonesia denitrificans DSM 20603

Jonesia denitrificans DSM 20603

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