Serinicoccus marinus JC1078 | Type strain | DSM 15273, IMSNU 14026, KCTC 9980, CCUG 51944, JCM 13024, CIP 108477

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electron microscopic image

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Information on culture and growth conditions Culture and growth conditions

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture medium growth

Medium recipe at MediaDive

Culture medium link

Culture medium composition

Culture medium

ISP 2

Culture medium growth

Culture medium composition

Culture medium

ISP 3

Culture medium growth

Culture medium composition

Culture medium

ISP 4

Culture medium growth

Culture medium composition

Culture medium

ISP 5

Culture medium growth

Culture medium composition

Culture medium

ISP 6

Culture medium growth

Culture medium composition

Culture medium

ISP 7

Culture medium growth

Culture medium composition

[Ref.: #36052]

Culture medium

Marine agar (MA)

[Ref.: #36052]

Culture medium growth

[Ref.: #36052]

Culture medium composition

Medium recipe provided by DSMZ

[Ref.: #120820]

Culture medium

CIP Medium 13

[Ref.: #120820]

Culture medium growth

[Ref.: #120820]

Culture medium link

	Kind of temperature		Temperature
[Ref.: #5789]		growth	30 °C
[Ref.: #18522]		optimum	22 °C
[Ref.: #30182]		growth	10-35 °C
[Ref.: #30182]		optimum	35 °C
[Ref.: #36052]		growth	30 °C
[Ref.: #59382]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #67771]		growth	30 °C
[Ref.: #120820]		growth	25-30 °C
[Ref.: #120820]	negative	growth	10 °C
[Ref.: #120820]	negative	growth	15 °C
[Ref.: #120820]	negative	growth	37 °C
[Ref.: #120820]	negative	growth	41 °C
[Ref.: #120820]	negative	growth	45 °C

	pH	Kind of pH		pH
[Ref.: #30182]			optimum	8
[Ref.: #30182]			growth	06-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30182]	Oxygen tolerance	aerobe
[Ref.: #59382]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #120820]	Oxygen tolerance	obligate aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %93.8

[Ref.: #30182]

Ability of spore formation

	Salt	Tested relation		Salt conc.
[Ref.: #30182]	NaCl		growth	0-14	%
[Ref.: #30182]	NaCl		optimum	2.5	%
[Ref.: #120820]	NaCl		growth	2-10	%
[Ref.: #120820]	NaCl	no	growth	0	%

[Ref.: #67770]	Observation	quinones: MK-8(H₄)
[Ref.: #67771]	Observation	quinones: MK-8(H4)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30182]	acetate ChEBI	+	carbon source
[Ref.: #18522]	arabinose ChEBI	-
[Ref.: #30182]	cellobiose ChEBI	+	carbon source
[Ref.: #18522]	cellulose ChEBI	+
[Ref.: #120820]	citrate ChEBI	-	carbon source
[Ref.: #30182]	esculin ChEBI	+	hydrolysis
[Ref.: #120820]	esculin ChEBI	-	hydrolysis
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #18522]	fructose ChEBI	+
[Ref.: #30182]	fructose ChEBI	+	carbon source
[Ref.: #30182]	galactose ChEBI	+	carbon source
[Ref.: #30182]	gelatin ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #18522]	glucose ChEBI	+
[Ref.: #30182]	glucose ChEBI	+	carbon source
[Ref.: #30182]	glycerol ChEBI	+	carbon source
[Ref.: #120820]	hippurate ChEBI	+	hydrolysis
[Ref.: #18522]	mannitol ChEBI	+
[Ref.: #30182]	mannitol ChEBI	+	carbon source
[Ref.: #30182]	mannose ChEBI	+	carbon source
[Ref.: #18522]	myo-inositol ChEBI	-
[Ref.: #30182]	nitrate ChEBI	+	reduction
[Ref.: #120820]	nitrate ChEBI	-	reduction
[Ref.: #120820]	nitrate ChEBI	-	respiration
[Ref.: #120820]	nitrite ChEBI	-	reduction
[Ref.: #18522]	raffinose ChEBI	+
[Ref.: #18522]	rhamnose ChEBI	-
[Ref.: #30182]	sorbitol ChEBI	+	carbon source
[Ref.: #18522]	sucrose ChEBI	+
[Ref.: #30182]	sucrose ChEBI	+	carbon source
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30182]	trehalose ChEBI	+	carbon source
[Ref.: #30182]	tween 80 ChEBI	+	carbon source
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #18522]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #120820]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120820]		acetoin ChEBI	-
[Ref.: #120820]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #120820]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120820]	amylase	-
[Ref.: #120820]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #120820]	caseinase	-	3.4.21.50
[Ref.: #30182]	catalase	+	1.11.1.6
[Ref.: #120820]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #120820]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #120820]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #120820]	gelatinase	+/-
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #120820]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120820]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120820]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #120820]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120820]	oxidase	-
[Ref.: #120820]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #120820]	protease	+
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #120820]	tryptophan deaminase	-
[Ref.: #120820]	tween esterase	-
[Ref.: #120820]	urease	-	3.5.1.5
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18522]	156	not determinedn.d.	-	+	-	-	-	+	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	-	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18522]	215	not determinedn.d.	-	+	-	-	+	+	-	+	-	-	-	+	-	-	+	-	-	-	-
[Ref.: #120820]	11214	-	-	+	+	-	+	+	-	-	-	+	-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5789]	Sample type/isolated from	sea water
[Ref.: #5789]	Geographic location (country and/or sea, region)	East Sea
[Ref.: #5789]	Country	Republic of Korea
[Ref.: #5789]	Country ISO 3 Code	KOR
[Ref.: #5789]	Continent	Asia

[Ref.: #59382]	Sample type/isolated from	Seawater
[Ref.: #59382]	Country	Republic of Korea
[Ref.: #59382]	Country ISO 3 Code	KOR
[Ref.: #59382]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Seawater
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From a sea-water-sample from the East Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #120820]	Sample type/isolated from	Environment, Sea water sample
[Ref.: #120820]	Geographic location (country and/or sea, region)	East sea
[Ref.: #120820]	Country	Republic of Korea
[Ref.: #120820]	Country ISO 3 Code	KOR
[Ref.: #120820]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY382898 (>99% sequence identity) for Serinicoccus from Microbeatlas

Aquatic Samples	431
Soil Samples	156
Animal Samples	2265
Plant Samples	38
Total Samples	2890

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18522]	Biosafety level	1	Risk group (German classification)
[Ref.: #5789]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120820]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5789]	Serinicoccus marinus strain JC1078 16S ribosomal RNA gene, partial sequence	AY382898	1408	GenBank ENA	247333 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Serinicoccus marinus DSM 15273	GCA_000421245	contig	GenBank ENA	1123251 tax ID
[Ref.: #66792]	Serinicoccus marinus DSM 15273	GCA_008386315	complete	GenBank ENA	1123251 tax ID	*
[Ref.: #66792]	Serinicoccus marinus DSM 15273	1123251.10	complete	PATRIC	1123251 tax ID	*
[Ref.: #66792]	Serinicoccus marinus DSM 15273	1123251.3	wgs	PATRIC	1123251 tax ID	*
[Ref.: #66792]	Serinicoccus marinus DSM 15273	2524614805	draft	JGI IMG/M	1123251 tax ID	*

[Ref.: #30182]	GC-content	72 mol%
[Ref.: #67770]	GC-content	72 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	71.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Serinicoccus marinus DSM 15273 DSM 15273 NCBI: GCA_008386315.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	92.23	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	95.03	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	82.021	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	75.881	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	94.667	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	89.667	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Serinicoccus marinus DSM 15273 PATRIC: 1123251.10
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	93.8
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	98.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	75.9
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	82.2

Availability in culture collections External links