Ornithinimicrobium murale (DSM 22056, CCM 7610, 01-Gi-040)

Name: Ornithinimicrobium murale (DSM 22056, CCM 7610, 01-Gi-040)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6281

Type strain

Strain Designation 01-Gi-040

Culture col. no. DSM 22056 CCM 7610 01-Gi-040 JCM 30495

NCBI tax ID(s) 1050153

Special Collections DSMZ JCM Literature strains

History <- P. Kämpfer, Univ. Giessen, Germany <- J. Schäfer; 01-Gi-040 CCM 7610 <-- P. Kämpfer; Justus-Liebig-Univ. Giessen, Germany; 01-Gi-040.

Links

Ornithinimicrobium murale 01-Gi-040 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from indoor wall colonized by moulds.

Gram-positive coccus-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403006

DSM 22056

@ref 20215

Last LPSN update 2026-02-09 11:19:10

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Ornithinimicrobiaceae

Genus Ornithinimicrobium

Species Ornithinimicrobium murale

Full scientific name Ornithinimicrobium murale Kämpfer et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30430	positive	1.3 µm	1.3 µm	coccus-shaped
125438					92
125439					93.7
125439	positive				99.8

Pigmentation

30430

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16112	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
16112	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16112	positive	growth	28
30430	positive	growth	22.5
30430	positive	optimum	15-30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
30430	positive	optimum	8
30430	positive	growth	7.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30430	aerobe
125439	obligate aerobe	95.5

Spore formation

30430

Spore formationno

Observation

67770

Observationquinones: MK-8(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30430	37054 ChEBI	3-hydroxybutyrate	+	carbon source
30430	30089 ChEBI	acetate	+	carbon source
30430	16449 ChEBI	alanine	+	carbon source
30430	17057 ChEBI	cellobiose	+	carbon source
30430	28757 ChEBI	fructose	+	carbon source
30430	28260 ChEBI	galactose	+	carbon source
30430	24996 ChEBI	lactate	+	carbon source
30430	25115 ChEBI	malate	+	carbon source
30430	17306 ChEBI	maltose	+	carbon source
30430	29864 ChEBI	mannitol	+	carbon source
30430	26271 ChEBI	proline	+	carbon source
30430	15361 ChEBI	pyruvate	+	carbon source
30430	33942 ChEBI	ribose	+	carbon source
30430	17822 ChEBI	serine	+	carbon source
30430	17992 ChEBI	sucrose	+	carbon source
30430	27082 ChEBI	trehalose	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#Indoor
#Host	#Fungi	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16112	indoor wall colonized by moulds	Giessen	Germany	DEU	Europe
67770	Cellar wall of a house colonized by moulds	Giessen	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16112	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM335283v1 assembly for Ornithinimicrobium murale DSM 22056	contig	GCA_003352835	1050153.8	2833457382	1050153	41.14
66792	Ornithinimicrobium murale strain DSM 22056	contig		1050153.3		1050153	38.1

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16112	Ornithinimicrobium murale partial 16S rRNA gene, type strain 01-Gi-040T	FR874098	1437		1050153
124043	Ornithinimicrobium murale strain CCM 7610 16S ribosomal RNA gene, partial sequence.	MT760157	1334		1050153

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Ornithinimicrobium murale DSM 22056
NCBI: GCA_003352835

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.50	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	motility	BacteriaNetⓘ	no	93.70	no
125439	spore_formation	BacteriaNetⓘ	yes	62.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ornithinimicrobium murale strain DSM 22056
PATRIC: 1050153.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.64	yes
125438	anaerobic	anaerobicⓘ	no	91.04	yes
125438	spore-forming	spore-formingⓘ	no	72.81	no
125438	aerobic	aerobicⓘ	yes	80.63	yes
125438	thermophilic	thermophileⓘ	no	91.89	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ornithinimicrobium sediminis sp. nov., a novel actinobacterium isolated from a saline lake sediment.	Gao L, Fang BZ, Liu YH, Huang Y, Jiao JY, Li L, Antunes A, Li WJ	Arch Microbiol	10.1007/s00203-022-02898-7	2022
Phylogeny	Ornithinimicrobium cavernae sp. nov., an actinobacterium isolated from a karst cave.	Zhang LY, Ming H, Meng XL, Fang BZ, Jiao JY, Salam N, Zhang XT, Li WJ, Nie GX	Antonie Van Leeuwenhoek	10.1007/s10482-018-1141-6	2018
Phylogeny	Ornithinimicrobium tianjinense sp. nov., isolated from a recirculating aquaculture system.	Liu LZ, Liu Y, Chen Z, Liu HC, Zhou YG, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.052514-0	2013
Phylogeny	Ornithinimicrobium murale sp. nov., isolated from an indoor wall colonized by moulds.	Kampfer P, Glaeser SP, Schafer J, Lodders N, Martin K, Schumann P	Int J Syst Evol Microbiol	10.1099/ijs.0.035873-0	2012

References

#16112	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22056
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26766	IJSEM 119 2013 ( DOI 10.1099/ijs.0.035873-0 , PubMed 22888195 )
#30430	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26766
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ornithinimicrobium murale (DSM 22056, CCM 7610, 01-Gi-040)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003352835

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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