Name: Intrasporangium chromatireducens Q5-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6246

Type strain:

Species: Intrasporangium chromatireducens

Strain Designation: Q5-1

Culture col. no.: DSM 25801, CCTCC Aa 2010019, CGMCC 1.10750, KCTC 19811, NRRL B-59521, JCM 18316

Strain history: <- H Liu, Huzhong Agriculture Univ., China

NCBI tax ID(s): 1386088 (species)

SI-ID 397273

DSM 25801

Special Collections

Section

Intrasporangium chromatireducens Q5-1 is an aerobe, Gram-positive bacterium that was isolated from subsurface soil of manganese mine.

Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Intrasporangiaceae*
	Genus	*Intrasporangium*
	Species	**Intrasporangium chromatireducens**
	Full Scientific Name (LPSN)	Intrasporangium chromatireducens Liu et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30193]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #30193]	Cell width	0.3-0.5 µm

[Ref.: #30193]	Motility	no

[Ref.: #30193]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18112]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #18112]

Culture medium growth

[Ref.: #18112]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18112]

Culture medium composition

expand / minimize

[Ref.: #18112]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #18112]

Culture medium growth

[Ref.: #18112]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18112]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18112]	growth	28 °C
[Ref.: #30193]	growth	10-45 °C
[Ref.: #30193]	optimum	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #30193]			optimum	8
[Ref.: #30193]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30193]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30193]		NaCl		growth	0-4	%
[Ref.: #30193]		NaCl		optimum	1	%

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30193]	2-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #30193]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #30193]	acetate ChEBI	+	carbon source
[Ref.: #30193]	adipate ChEBI	+	carbon source
[Ref.: #30193]	alanine ChEBI	+	carbon source
[Ref.: #30193]	esculin ChEBI	+	hydrolysis
[Ref.: #30193]	gluconate ChEBI	+	carbon source
[Ref.: #30193]	glucose ChEBI	+	carbon source
[Ref.: #30193]	histidine ChEBI	+	carbon source
[Ref.: #30193]	lactate ChEBI	+	carbon source
[Ref.: #30193]	malate ChEBI	+	carbon source
[Ref.: #30193]	maltose ChEBI	+	carbon source
[Ref.: #30193]	mannitol ChEBI	+	carbon source
[Ref.: #30193]	mannose ChEBI	+	carbon source
[Ref.: #30193]	nitrate ChEBI	+	reduction
[Ref.: #30193]	ribose ChEBI	+	carbon source
[Ref.: #30193]	valerate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30193]		catalase	+	1.11.1.6
[Ref.: #30193]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18112]	Sample type/isolated from	subsurface soil of manganese mine
[Ref.: #18112]	Geographic location (country and/or sea, region)	Hunan Province
[Ref.: #18112]	Country	China
[Ref.: #18112]	Country ISO 3 Code	CHN
[Ref.: #18112]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Subsurface soil of a manganese mine
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hunan Province, central-south China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From chromium-manganese mine
[Ref.: #67771]	Geographic location (country and/or sea, region)	Hunan
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ487951 (>99% sequence identity) for Intrasporangium chromatireducens subclade from Microbeatlas

Aquatic Samples	25
Soil Samples	233
Animal Samples	98
Plant Samples	27
Total Samples	383

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18112]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18112]	Intrasporangium chromatireducens Q5-1 16S ribosomal RNA gene, partial sequence	FJ487951	1449	GenBank ENA	584657 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Intrasporangium chromatireducens Q5-1	GCA_000576575	contig	GenBank ENA	584657 tax ID
[Ref.: #66792]	Intrasporangium chromatireducens Q5-1	584657.9	wgs	PATRIC	584657 tax ID	*
[Ref.: #66792]	Intrasporangium chromatireducens Q5-1	2588253842	draft	JGI IMG/M	584657 tax ID	*

[Ref.: #18112]	GC-content	71.5 mol%
[Ref.: #67770]	GC-content	71.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Intrasporangium chromatireducens Q5-1 PATRIC: 584657.9
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.167	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.354	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	55.739	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.275	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.033	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87	yes

Availability in culture collections External links

[Ref.: #18112]

Culture collection no.

DSM 25801, CCTCC Aa 2010019, CGMCC 1.10750, KCTC 19811, NRRL B-59521, JCM 18316

[Ref.: #75724]

SI-ID 397273

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Intrasporangium chromatireducens sp. nov., a chromate-reducing actinobacterium isolated from manganese mining soil, and emended description of the genus Intrasporangium.	Liu H, Wang H, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.030528-0	2011	*

References

#18112

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25801

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30193

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26539 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75724

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397273.1 )

#26539

IJSEM 403 2012 ( DOI 10.1099/ijs.0.030528-0 , PubMed 21441371 )

* These data were automatically processed and therefore are not curated

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