Name: Aliidiomarina maris CF12-14
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6238

Type strain:

Species: Aliidiomarina maris

Strain Designation: CF12-14

Culture col. no.: DSM 22154, CCTCC AB 208166, KACC 13974

Strain history: <- X. Zhang, State Key Lab. Microbial Technol., Marine Biotechnol. Res. Center, Shandong Univ., Jinan, China; CF12-14 <- M. Zhou and Y. Zhang

NCBI tax ID(s): 531312 (species)

SI-ID 398545

DSM 22154

Section

Aliidiomarina maris CF12-14 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from deep-sea sediment at a water depth of 1153 m.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Idiomarinaceae*
	Genus	*Aliidiomarina*
	Species	**Aliidiomarina maris**
	Full Scientific Name (LPSN)	Aliidiomarina maris (Zhang et al. 2012) Chiu et al. 2014

Synonym

Idiomarina maris

Information on morphological and physiological properties Morphology

[Ref.: #29985]	Gram stain	negative

[Ref.: #29985]	Cell length	0.8-2.4 µm

[Ref.: #29985]	Cell width	0.3-0.6 µm

[Ref.: #29985]	Cell shape	rod-shaped

[Ref.: #29985]	Motility	yes

[Ref.: #29985]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16170]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16170]

Culture medium growth

[Ref.: #16170]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16170]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16170]	growth	28 °C
[Ref.: #29985]	growth	25-40 °C
[Ref.: #29985]	optimum	30-35 °C

[Ref.: #16170]	Temperature range	mesophilic
[Ref.: #29985]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29985]			optimum	8.0-9.5
[Ref.: #29985]			growth	6.0-11.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29985]

Oxygen tolerance

aerobe

[Ref.: #29985]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29985]		NaCl		growth	0.1-15.0	%
[Ref.: #29985]		NaCl		optimum	2-3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29985]	leucine ChEBI	+	carbon source
[Ref.: #29985]	nitrate ChEBI	+	reduction
[Ref.: #29985]	tween 40 ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29985]	acid phosphatase	+	3.1.3.2
[Ref.: #29985]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29985]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16170]	Sample type/isolated from	deep-sea sediment at a water depth of 1153 m
[Ref.: #16170]	Geographic location (country and/or sea, region)	South China Sea (19° 44.94' N, 114° 44.95' E)
[Ref.: #16170]	Country	China
[Ref.: #16170]	Country ISO 3 Code	CHN
[Ref.: #16170]	Continent	Asia
[Ref.: #16170]	Geographic location	19.7490°/114.7490°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU723884 (>99% sequence identity) for Aliidiomarina maris from Microbeatlas

Aquatic Samples	156
Soil Samples	30
Animal Samples	223
Plant Samples	11
Total Samples	420

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16170]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16170]	Idiomarina maris strain CF12-14 16S ribosomal RNA gene, partial sequence	EU723884	1502	ENA	531312 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aliidiomarina maris CF12-14	GCA_003987335	contig	GenBank	531312 tax ID	*

[Ref.: #16170]	GC-content	50.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29985]	GC-content	50.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aliidiomarina maris CF12-14 NCBI: GCA_003987335.1
[Ref.: #69480]	motile	yes	93.29	yes
[Ref.: #69480]	flagellated	yes	58.828	no
[Ref.: #69480]	gram-positive	no	99.016	yes
[Ref.: #69480]	anaerobic	no	96.438	yes
[Ref.: #69480]	aerobic	yes	90.424	yes
[Ref.: #69480]	halophile	no	50.775	no
[Ref.: #69480]	spore-forming	no	94.624	yes
[Ref.: #69480]	thermophile	no	99.458	yes
[Ref.: #69480]	glucose-util	yes	73.691	no
[Ref.: #69480]	glucose-ferment	no	82.547	no

Availability in culture collections External links

[Ref.: #16170]

Culture collection no.

DSM 22154, CCTCC AB 208166, KACC 13974

[Ref.: #75717]

SI-ID 398545

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aliidiomarina soli sp. nov., isolated from saline-alkaline soil.	Xu L, Sun JQ, Wang LJ, Liu XZ, Ji YY, Shao ZQ, Wu XL	Int J Syst Evol Microbiol	10.1099/ijsem.0.001709	2017	*
Phylogeny	Idiomarina maris sp. nov., a marine bacterium isolated from sediment.	Zhang YJ, Zhang XY, Zhao HL, Zhou MY, Li HJ, Gao ZM, Chen XL, Dang HY, Zhang YZ	Int J Syst Evol Microbiol	10.1099/ijs.0.027896-0	2011	*

References

#16170

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22154

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29985

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26352 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75717

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398545.1 )

#26352

IJSEM 370 2012 ( DOI 10.1099/ijs.0.027896-0 , PubMed 21441375 )

* These data were automatically processed and therefore are not curated

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