Name: Idiomarina seosinensis CL-SP19
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6234

Type strain:

Species: Idiomarina seosinensis

Strain Designation: CL-SP19

Culture col. no.: DSM 21922, JCM 12526, KCTC 12296, CIP 108665

Strain history: CIP <- 2005, JCM <- 2004, D.H. Choi, Seoul Nat. Univ., Seoul, Korea: strain CL-SP19

NCBI tax ID(s): 281739 (species)

SI-ID 135112

JCM 12526, KCTC 12296, CIP 108665, DSM 21922

Section

Idiomarina seosinensis CL-SP19 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from hypersaline water from a solar saltern.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Idiomarinaceae*
	Genus	*Idiomarina*
	Species	**Idiomarina seosinensis**
	Full Scientific Name (LPSN)	Idiomarina seosinensis Choi and Cho 2005

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #122560]	Gram stain	negative

[Ref.: #122560]	Cell shape	rod-shaped

[Ref.: #122560]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16036]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16036]

Culture medium growth

[Ref.: #16036]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16036]

Culture medium composition

expand / minimize

[Ref.: #40669]

Culture medium

Marine agar (MA)

[Ref.: #40669]

Culture medium growth

[Ref.: #40669]

Culture medium composition

expand / minimize

[Ref.: #122560]

Culture medium

CIP Medium 13

[Ref.: #122560]

Culture medium growth

[Ref.: #122560]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #16036]		growth	28 °C
[Ref.: #40669]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #67771]		growth	30 °C
[Ref.: #122560]		growth	15-37 °C
[Ref.: #122560]	no	growth	5 °C
[Ref.: #122560]	no	growth	41 °C

[Ref.: #16036]	Temperature range	mesophilic
[Ref.: #40669]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic
[Ref.: #122560]	Temperature range	psychrophilic
[Ref.: #122560]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #122560]	NaCl	no	growth	0	%
[Ref.: #122560]	NaCl	no	growth	2	%
[Ref.: #122560]	NaCl	no	growth	4	%
[Ref.: #122560]	NaCl	no	growth	6	%
[Ref.: #122560]	NaCl	no	growth	8	%
[Ref.: #122560]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122560]	citrate ChEBI	-	carbon source
[Ref.: #122560]	esculin ChEBI	+	hydrolysis
[Ref.: #122560]	glucose ChEBI	-	fermentation
[Ref.: #122560]	glucose ChEBI	-	degradation
[Ref.: #122560]	lactose ChEBI	-	fermentation
[Ref.: #122560]	nitrate ChEBI	-	reduction
[Ref.: #122560]	nitrite ChEBI	-	reduction
[Ref.: #122560]	sodium thiosulfate ChEBI	-	builds gas from

	Metabolite production	Metabolite	Production
[Ref.: #122560]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #122560]		acetoin ChEBI	-
[Ref.: #122560]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122560]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122560]	amylase	-
[Ref.: #122560]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122560]	caseinase	+	3.4.21.50
[Ref.: #122560]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #122560]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122560]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #122560]	gelatinase	+/-
[Ref.: #122560]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122560]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122560]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122560]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122560]	oxidase	+
[Ref.: #122560]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122560]	tryptophan deaminase	-
[Ref.: #122560]	tween esterase	+
[Ref.: #122560]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122560]	11370	-	+	+	+	-	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16036]	Sample type/isolated from	hypersaline water from a solar saltern
[Ref.: #16036]	Geographic location (country and/or sea, region)	Seosin
[Ref.: #16036]	Country	Republic of Korea
[Ref.: #16036]	Country ISO 3 Code	KOR
[Ref.: #16036]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Hypersaline water from a solar saltern located in Seosin
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From salt field
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #122560]	Sample type/isolated from	Environment, Hypersaline water
[Ref.: #122560]	Geographic location (country and/or sea, region)	Seosin
[Ref.: #122560]	Country	Republic of Korea
[Ref.: #122560]	Country ISO 3 Code	KOR
[Ref.: #122560]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY635468 (>99% sequence identity) for Idiomarina from Microbeatlas

Aquatic Samples	898
Soil Samples	82
Animal Samples	80
Plant Samples	14
Total Samples	1074

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16036]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122560]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16036]	Idiomarina seosinensis 16S ribosomal RNA gene, partial sequence	AY635468	1463	ENA	281739 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Idiomarina seosinensis CL-SP19	GCA_003987275	contig	GenBank	281739 tax ID
[Ref.: #66792]	Idiomarina seosinensis CL-SP19	2895657507	draft	JGI IMG/M	281739 tax ID	*

[Ref.: #16036]	GC-content	45.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	47.27 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	45 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #16036]

Culture collection no.

DSM 21922, JCM 12526, KCTC 12296, CIP 108665

[Ref.: #75713]

SI-ID 135112

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aliidiomarina iranensis sp. nov., a haloalkaliphilic bacterium from a coastal-marine wetland.	Ali Amoozegar M, Shahinpei A, Abolhassan Shahzadeh Fazeli S, Schumann P, Sproer C, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijsem.0.000996	2016	*
Phylogeny	Idiomarina aquatica sp. nov., a moderately halophilic bacterium isolated from salterns.	Jose Leon M, Martinez-Checa F, Ventosa A, Sanchez-Porro C	Int J Syst Evol Microbiol	10.1099/ijsem.0.000619	2015	*
Phylogeny	Idiomarina maris sp. nov., a marine bacterium isolated from sediment.	Zhang YJ, Zhang XY, Zhao HL, Zhou MY, Li HJ, Gao ZM, Chen XL, Dang HY, Zhang YZ	Int J Syst Evol Microbiol	10.1099/ijs.0.027896-0	2011	*
Phylogeny	Idiomarina xiamenensis sp. nov., isolated from surface seawater, and proposal to transfer Pseudidiomarina aestuarii to the genus Idiomarina as Idiomarina aestuarii comb. nov.	Wang L, Lai Q, Fu Y, Chen H, Wang W, Wang J, Sun F, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.022970-0	2010	*
Phylogeny	Idiomarina seosinensis sp. nov., isolated from hypersaline water of a solar saltern in Korea.	Choi DH, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.63365-0	2005	*

References

#16036

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21922

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#40669 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75713

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID135112.1 )

#122560 Collection of Institut Pasteur ; Curators of the CIP; CIP 108665
* These data were automatically processed and therefore are not curated

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