Idiomarina seosinensis (DSM 21922, JCM 12526, KCTC 12296)

Name: Idiomarina seosinensis (DSM 21922, JCM 12526, KCTC 12296)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6234

Type strain

Strain Designation CL-SP19

Culture col. no. DSM 21922 JCM 12526 KCTC 12296 CL-SP19 CIP 108665

NCBI tax ID(s) 281739

Special Collections DSMZ JCM KCTC CIP

History <- JCM/RIKEN <- D. H. Choi, Seoul Natl. Univ., Republic of Korea; CL-SP19 D. H. Choi CL-SP19. <- DH Choi, Seoul Nat. Univ. CIP <- 2005, JCM <- 2004, D.H. Choi, Seoul Nat. Univ., Seoul, Korea: strain CL-SP19

Links

Idiomarina seosinensis CL-SP19 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from hypersaline water from a solar saltern.

Gram-negative aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 135112

JCM 12526,KCTC 12296,CIP 108665,DSM 21922

@ref 20215

Last LPSN update 2026-02-09 11:19:10

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Idiomarinaceae

Genus Idiomarina

Species Idiomarina seosinensis

Full scientific name Idiomarina seosinensis Choi and Cho 2005

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
67771	negative
122560	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16036	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
40669	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
122560	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16036	positive	growth	28	mesophilic
40669	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
67771	positive	growth	30	mesophilic
122560	positive	growth	15-37
122560	negative	growth	5
122560	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	obligate aerobe	98.7

Halophily

@ref	Salt	Tested relation	Concentration
122560	NaCl	growth	0 %
122560	NaCl	growth	2 %
122560	NaCl	growth	4 %
122560	NaCl	growth	6 %
122560	NaCl	growth	8 %
122560	NaCl	growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
122560	16947 ChEBI	citrate	-	carbon source
122560	4853 ChEBI	esculin	+	hydrolysis
122560	17234 ChEBI	glucose	-	fermentation
122560	17234 ChEBI	glucose	-	degradation
122560	17716 ChEBI	lactose	-	fermentation
122560	17632 ChEBI	nitrate	-	reduction
122560	16301 ChEBI	nitrite	-	reduction
122560	132112 ChEBI	sodium thiosulfate	-	builds gas from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122560	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
122560	15688 ChEBI	acetoin	-
122560	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122560	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122560	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
122560	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122560	caseinase	+	3.4.21.50
122560	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
122560	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122560	gamma-glutamyltransferase	+	2.3.2.2
122560	gelatinase	+/-
122560	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
122560	lipase	+
68382	lipase (C 14)	-		from API zym
122560	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122560	ornithine decarboxylase	-	4.1.1.17
122560	oxidase	+
122560	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
122560	tryptophan deaminase	-
122560	tween esterase	+
122560	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122560	-	+	+	+	-	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic
#Condition	#Saline

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16036	hypersaline water from a solar saltern	Seosin	Republic of Korea	KOR	Asia
67770	Hypersaline water from a solar saltern located in Seosin		Republic of Korea	KOR	Asia
67771	From salt field		Republic of Korea	KOR	Asia
122560	Environment, Hypersaline water	Seosin	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY635468 (>99% sequence identity) for Idiomarina from Microbeatlas

Aquatic Samples	898
Soil Samples	82
Animal Samples	80
Plant Samples	14
Total Samples	1074

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16036	1	Risk group (German classification) According to TRBA 466
122560	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM398727v1 assembly for Idiomarina seosinensis CL-SP19	contig	GCA_003987275	281739.3	2895657507	281739	77.65

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16036	Idiomarina seosinensis 16S ribosomal RNA gene, partial sequence	AY635468	1463		281739

GC content

@ref	GC-content (mol%)	Method
16036	45.0	high performance liquid chromatography (HPLC)
67770	47.27	genome sequence analysis
67770	45	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Idiomarina seosinensis CL-SP19
NCBI: GCA_003987275

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	84.40	no
125439	motility	BacteriaNetⓘ	yes	72.80	no
125439	gram_stain	BacteriaNetⓘ	variable	51.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.70	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aliidiomarina iranensis sp. nov., a haloalkaliphilic bacterium from a coastal-marine wetland.	Ali Amoozegar M, Shahinpei A, Abolhassan Shahzadeh Fazeli S, Schumann P, Sproer C, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijsem.0.000996	2016
Phylogeny	Idiomarina aquatica sp. nov., a moderately halophilic bacterium isolated from salterns.	Jose Leon M, Martinez-Checa F, Ventosa A, Sanchez-Porro C	Int J Syst Evol Microbiol	10.1099/ijsem.0.000619	2015
Phylogeny	Idiomarina maris sp. nov., a marine bacterium isolated from sediment.	Zhang YJ, Zhang XY, Zhao HL, Zhou MY, Li HJ, Gao ZM, Chen XL, Dang HY, Zhang YZ	Int J Syst Evol Microbiol	10.1099/ijs.0.027896-0	2011
Phylogeny	Idiomarina xiamenensis sp. nov., isolated from surface seawater, and proposal to transfer Pseudidiomarina aestuarii to the genus Idiomarina as Idiomarina aestuarii comb. nov.	Wang L, Lai Q, Fu Y, Chen H, Wang W, Wang J, Sun F, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.022970-0	2010
Phylogeny	Idiomarina seosinensis sp. nov., isolated from hypersaline water of a solar saltern in Korea.	Choi DH, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.63365-0	2005

References

#16036	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21922
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#40669	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122560	Collection of Institut Pasteur ; Curators of the CIP; CIP 108665
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Idiomarina seosinensis (DSM 21922, JCM 12526, KCTC 12296)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003987275

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media