Name: Pseudidiomarina homiensis PO-M2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6233

Type strain:

Species: Pseudidiomarina homiensis

Strain Designation: PO-M2

Culture col. no.: DSM 17923, CIP 109781, KACC 11514

Strain history: CIP <- 2007, DSMZ <- S.W. Kwon, RDA, Suwon, Korea: strain PO-M2

NCBI tax ID(s): 364198 (species)

SI-ID 297241

DSM 17923, KACC 11514, CIP 109781

Section

Pseudidiomarina homiensis PO-M2 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from seasand.

Gram-negative
motile
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Idiomarinaceae*
	Genus	*Pseudidiomarina*
	Species	**Pseudidiomarina homiensis**
	Full Scientific Name (LPSN)	Pseudidiomarina homiensis (Kwon et al. 2006) Jean et al. 2009

Synonym

Idiomarina homiensis

Information on morphological and physiological properties Morphology

[Ref.: #119935]	Gram stain	negative

[Ref.: #119935]	Cell shape	rod-shaped

[Ref.: #119935]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7249]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7249]

Culture medium growth

[Ref.: #7249]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7249]

Culture medium composition

expand / minimize

[Ref.: #37836]

Culture medium

Marine agar (MA)

[Ref.: #37836]

Culture medium growth

[Ref.: #37836]

Culture medium composition

expand / minimize

[Ref.: #119935]

Culture medium

CIP Medium 13

[Ref.: #119935]

Culture medium growth

[Ref.: #119935]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #7249]			growth	28 °C
[Ref.: #37836]			growth	30 °C

[Ref.: #7249]	Temperature range	mesophilic
[Ref.: #37836]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119935]

Oxygen tolerance

obligate aerobe

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119935]		nitrate ChEBI	+	reduction
[Ref.: #119935]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #119935]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119935]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119935]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #119935]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119935]	12107	-	+	+	+	-	+	+	-	+	+	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7249]	Sample type/isolated from	seasand
[Ref.: #7249]	Country	Republic of Korea
[Ref.: #7249]	Country ISO 3 Code	KOR
[Ref.: #7249]	Continent	Asia

[Ref.: #119935]	Sample type/isolated from	Environment, Seashore sand
[Ref.: #119935]	Geographic location (country and/or sea, region)	Pohang
[Ref.: #119935]	Country	Republic of Korea
[Ref.: #119935]	Country ISO 3 Code	KOR
[Ref.: #119935]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Sandy

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7249]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119935]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7249]	Idiomarina homiensis strain PO-M2 16S ribosomal RNA gene, partial sequence	DQ342238	1460	ENA	364198 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudidiomarina homiensis PO-M2	GCA_003987225	contig	GenBank	364198 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudidiomarina homiensis PO-M2 NCBI: GCA_003987225.1
[Ref.: #69480]	flagellated	no	79.621	no
[Ref.: #69480]	gram-positive	no	99.013	no
[Ref.: #69480]	anaerobic	no	98.232	no
[Ref.: #69480]	aerobic	yes	85.539	no
[Ref.: #69480]	halophile	no	54.015	no
[Ref.: #69480]	spore-forming	no	97.529	no
[Ref.: #69480]	thermophile	no	99.132	yes
[Ref.: #69480]	glucose-util	yes	87.932	no
[Ref.: #69480]	motile	yes	86.147	no
[Ref.: #69480]	glucose-ferment	no	78.607	no

Availability in culture collections External links

[Ref.: #7249]

Culture collection no.

DSM 17923, CIP 109781, KACC 11514

[Ref.: #75712]

SI-ID 297241

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Idiomarina halophila sp. nov., isolated from a solar saltern sediment.	Lee JC, Kim YS, Yun BS, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.000094	2015	*
Phylogeny	Idiomarina aquimaris sp. nov., isolated from the reef-building coral Isopora palifera.	Chen MH, Sheu SY, Chen CA, Wang JT, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.035592-0	2011	*
Phylogeny	Idiomarina homiensis sp. nov., isolated from seashore sand in Korea.	Kwon SW, Kim BY, Weon HY, Baek YK, Koo BS, Go SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64283-0	2006	*

References

#7249

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17923

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37836 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75712

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297241.1 )

#119935 Collection of Institut Pasteur ; Curators of the CIP; CIP 109781
* These data were automatically processed and therefore are not curated

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