Ponticaulis koreensis GSW-23 | Type strain | DSM 19734, JCM 14975, KCTC 22146 | BacDiveID:6223

Strain identifier

BacDive ID: 6223

Type strain:

Species: Ponticaulis koreensis

Strain Designation: GSW-23

Culture col. no.: DSM 19734, JCM 14975, KCTC 22146

Strain history: S. D. Lee GSW-23.

NCBI tax ID(s): 551789 (strain), 1123045 (species)

SI-ID 403046

DSM 19734

Section

Ponticaulis koreensis GSW-23 is a mesophilic, motile bacterium that was isolated from Seawater.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Hyphomonadaceae*
	Genus	*Ponticaulis*
	Species	**Ponticaulis koreensis**
	Full Scientific Name (LPSN)	Ponticaulis koreensis Kang and Lee 2009

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %92.918

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8131]			growth	28 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #8131]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8131]	Sample type/isolated from	Seawater
[Ref.: #8131]	Geographic location (country and/or sea, region)	Jeju, Kymnyeong Beach
[Ref.: #8131]	Country	Republic of Korea
[Ref.: #8131]	Country ISO 3 Code	KOR
[Ref.: #8131]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Seawater from Kymnyeng Beach on the island of Jeju
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Global distribution of 16S sequence FM202497 (>99% sequence identity) for Ponticaulis koreensis subclade from Microbeatlas

Aquatic Samples	3792
Soil Samples	105
Animal Samples	74
Plant Samples	19
Total Samples	3990

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8131]	Hyphomonadaceae bacterium GSW-23 partial 16S rRNA gene, type strain GSW-23T	FM202497	1328	ENA	551789 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Ponticaulis koreensis DSM 19734	GCA_000420665	scaffold	GenBank	551789 tax ID
[Ref.: #66792]	Ponticaulis koreensis DSM 19734	551789.3	wgs	PATRIC	551789 tax ID	*
[Ref.: #66792]	Ponticaulis koreensis DSM 19734	2524614539	draft	JGI IMG/M	551789 tax ID	*

GC-content

53.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ponticaulis koreensis DSM 19734 DSM 19734 NCBI: GCA_000420665.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ponticaulis koreensis DSM 19734 PATRIC: 551789.3
[Ref.: #69480]	gram-positive	no	99.204	no
[Ref.: #69480]	anaerobic	no	98.737	no
[Ref.: #69480]	halophile	no	76.049	no
[Ref.: #69480]	spore-forming	no	96.989	no
[Ref.: #69480]	glucose-util	yes	78.749	no
[Ref.: #69480]	thermophile	no	96.878	yes
[Ref.: #69480]	aerobic	yes	90.505	no
[Ref.: #69480]	motile	yes	86.684	no
[Ref.: #69480]	flagellated	no	71.976	no
[Ref.: #69480]	glucose-ferment	no	93.056	no

Availability in culture collections External links

Culture collection no.

DSM 19734, JCM 14975, KCTC 22146

SI-ID 403046

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ponticaulis profundi sp. nov. isolated from a deep-sea seamount.	Sun YW, Liu J, Zhang DC	Antonie Van Leeuwenhoek	10.1007/s10482-018-1027-7	2018	*
Phylogeny	Ponticaulis koreensis gen. nov., sp. nov., a new member of the family Hyphomonadaceae isolated from seawater.	Kang HS, Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.011114-0	2009	*

References

#8131

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19734

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75702

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403046.1 )

* These data were automatically processed and therefore are not curated

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