Woodsholea maritima CM243 | Type strain | DSM 17123, LMG 21817, VKM B-1512 | BacDiveID:6218

Strain identifier

BacDive ID: 6218

Type strain:

Species: Woodsholea maritima

Strain Designation: CM243

Culture col. no.: DSM 17123, LMG 21817, VKM B-1512

Strain history: <- C. Strömpl <- J. Poindexter; CM243

NCBI tax ID(s): 1123503 (strain), 240237 (species)

SI-ID 71836

VKM B-1512, LMG 21817, DSM 17123

Other strains from Woodsholea maritima

W. maritima CM251, DSM 17124, LMG 21818

Section

Woodsholea maritima CM243 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Estuarine water.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Maricaulaceae*
	Genus	*Woodsholea*
	Species	**Woodsholea maritima**
	Full Scientific Name (LPSN)	Woodsholea maritima Abraham et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #30102]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #30102]	Cell length	3.5 µm

[Ref.: #30102]	Cell width	0.7 µm

[Ref.: #30102]	Cell shape	rod-shaped

[Ref.: #30102]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.822

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

WOODSHOLEA MEDIUM (DSMZ Medium 1238)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6770]			growth	28 °C
[Ref.: #30102]			growth	20-40 °C
[Ref.: #30102]			optimum	30 °C

[Ref.: #6770]	Temperature range	mesophilic
[Ref.: #30102]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30102]			optimum	7
[Ref.: #30102]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30102]		acid phosphatase	+	3.1.3.2
[Ref.: #30102]		alkaline phosphatase	+	3.1.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6770]	Sample type/isolated from	Estuarine water
[Ref.: #6770]	Geographic location (country and/or sea, region)	MA, Woods Hole
[Ref.: #6770]	Country	USA
[Ref.: #6770]	Country ISO 3 Code	USA
[Ref.: #6770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#Estuary

What are isolation sources categories?

Global distribution of 16S sequence AJ578476 (>99% sequence identity) for Woodsholea maritima subclade from Microbeatlas

Aquatic Samples	726
Soil Samples	120
Animal Samples	57
Plant Samples	9
Total Samples	912

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6770]	Woodsholensia maritima partial 16S rRNA gene, type strain CM243	AJ578476	1421	ENA	240237 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Woodsholea maritima DSM 17123	GCA_000382325	scaffold	GenBank	1123503 tax ID	*
[Ref.: #66792]	Woodsholea maritima DSM 17123	1123503.3	wgs	PATRIC	1123503 tax ID	*
[Ref.: #66792]	Woodsholea maritima DSM 17123	2522125070	draft	JGI IMG/M	1123503 tax ID	*

GC-content

65.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Woodsholea maritima DSM 17123 DSM 17123 NCBI: GCA_000382325.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Woodsholea maritima DSM 17123 DSM 17123 NCBI: GCA_000382325.1
[Ref.: #69480]	motile	yes	96.072	yes
[Ref.: #69480]	flagellated	yes	64.471	no
[Ref.: #69480]	gram-positive	no	99.212	yes
[Ref.: #69480]	anaerobic	no	98.081	no
[Ref.: #69480]	aerobic	yes	89.278	yes
[Ref.: #69480]	halophile	no	71.159	no
[Ref.: #69480]	spore-forming	no	94.596	no
[Ref.: #69480]	thermophile	no	93.871	no
[Ref.: #69480]	glucose-util	yes	78.199	no
[Ref.: #69480]	glucose-ferment	no	92.161	no

Availability in culture collections External links

Culture collection no.

DSM 17123, LMG 21817, VKM B-1512

SI-ID 71836

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Woodsholea maritima gen. nov., sp. nov., a marine bacterium with a low diversity of polar lipids.	Abraham WR, Strompl C, Vancanneyt M, Bennasar A, Swings J, Lunsdorf H, Smit J, Moore ERB	Int J Syst Evol Microbiol	10.1099/ijs.0.02943-0	2004	*

References

#6770

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17123

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30102

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26458 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75697

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID71836.1 )

#26458

IJSEM 1227 2004 ( DOI 10.1099/ijs.0.02943-0 , PubMed 15280296 )

* These data were automatically processed and therefore are not curated

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