Hyphomonas jannaschiana (DSM 5153, ATCC 33883, VP2)

Name: Hyphomonas jannaschiana (DSM 5153, ATCC 33883, VP2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6204

Type strain

Strain Designation VP2

Culture col. no. DSM 5153 ATCC 33883 VP2

NCBI tax ID(s) 86

Special Collections DSMZ

History <- ATCC <- R.M. Weiner, VP2 <- J. Poindexter

Links

Hyphomonas jannaschiana VP2 is a bacterium that was isolated from mussel bed in thermal vent.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 40743

ATCC 33883,DSM 5153

@ref 20215

Last LPSN update 2026-02-09 11:19:09

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Caulobacterales

Family Hyphomonadaceae

Genus Hyphomonas

Species Hyphomonas jannaschiana

Full scientific name Hyphomonas jannaschiana Weiner et al. 1985

BacDive ID	Other strains from **Hyphomonas jannaschiana** (1)	Type strain
23066	H. jannaschiana VP1, DSM 13427, ATCC 33882

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.802
125439	negative	98.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1935	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
1935	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		97.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Hydrothermal vent
#Host	#Invertebrates (Other)	#Mollusca
#Condition	#Thermophilic (>45°C)	-

Isolation

1935

Sample typemussel bed in thermal vent

Taxonmaps

69479

Global distribution of 16S sequence AF082789 (>99% sequence identity) for Hyphomonas from Microbeatlas

Aquatic Samples	5558
Soil Samples	293
Animal Samples	268
Plant Samples	79
Total Samples	6198

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1935	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	SOAPdenovo v1.05 assembly for Hyphomonas jannaschiana VP2	contig	GCA_000685215	1280952.3	2576861497	1280952	73.4

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Hyphomonas jannaschiana DNA for 16S ribosomal RNA, strain ATCC 33883 (T)	AJ227814	1410	86
20218	Hyphomonas jannaschiana strain DSM 5153 16S ribosomal RNA gene, partial sequence	KF863146	1419	86
20218	Hyphomonas jannaschiana strain VP-2 16S ribosomal RNA gene, partial sequence	AF082789	1368	86

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Hyphomonas jannaschiana VP2
NCBI: GCA_000685215

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	88.30	no
125439	gram_stain	BacteriaNetⓘ	negative	98.50	no
125439	motility	BacteriaNetⓘ	yes	71.50	no
125439	spore_formation	BacteriaNetⓘ	no	97.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Hyphomonas jannaschiana VP2
PATRIC: 1280952.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.80	no
125438	anaerobic	anaerobicⓘ	no	93.82	no
125438	spore-forming	spore-formingⓘ	no	89.48	no
125438	aerobic	aerobicⓘ	yes	86.86	no
125438	thermophilic	thermophileⓘ	no	95.46	no
125438	flagellated	motile2+ⓘ	yes	52.72	no

Literature

References

#1935	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5153
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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