Name: Hyphomicrobium denitrificans X
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6184

Type strain:

Species: Hyphomicrobium denitrificans

Strain Designation: X

Culture col. no.: DSM 1869

Strain history: <- W. Harder, strain X <- M.M. Attwood

NCBI tax ID(s): 53399 (species)

SI-ID 125568

ATCC 51888, NCIMB 11706, DSM 1869, NCIB 11706

Special Collections

DSMZ

Section

Hyphomicrobium denitrificans X is a bacterium of the family Hyphomicrobiaceae.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Hyphomicrobiaceae*
	Genus	*Hyphomicrobium*
	Species	**Hyphomicrobium denitrificans**
	Full Scientific Name (LPSN)	Hyphomicrobium denitrificans Urakami et al. 1995

Information on culture and growth conditions Culture and growth conditions

[Ref.: #915]

Culture medium

HYPHOMICROBIUM STRAIN X MEDIUM (DSMZ Medium 166)

[Ref.: #915]

Culture medium growth

[Ref.: #915]

Culture medium link

Medium recipe at MediaDive

[Ref.: #915]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #915]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #915]	Name of produced compound	dimethylamine dehydrogenase
[Ref.: #915]	Name of produced compound	methanol dehydrogenase

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #915]	Country	Netherlands
[Ref.: #915]	Country ISO 3 Code	NLD
[Ref.: #915]	Continent	Europe
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence Y14308 (>99% sequence identity) for Hyphomicrobium denitrificans from Microbeatlas

Aquatic Samples	958
Soil Samples	841
Animal Samples	335
Plant Samples	179
Total Samples	2313

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #915]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #915]	Hyphomicrobium denitrificans ATCC 51888 chromosome, complete genome	CP002083	3638969	GenBank ENA	582899 tax ID
[Ref.: #20218]	Hyphomicrobium denitrificans partial 16S rRNA gene	AJ854111	1242	GenBank ENA	53399 tax ID	*
[Ref.: #20218]	Hyphomicrobium denitrificans partial 16S rRNA gene, strain DSM 1869	Y14308	1446	GenBank ENA	53399 tax ID	*

Availability in culture collections External links

[Ref.: #915]

Culture collection no.

DSM 1869

[Ref.: #75666]

SI-ID 125568

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Quantification of Hyphomicrobium populations in activated sludge from an industrial wastewater treatment system as determined by 16S rRNA analysis.	Layton AC, Karanth PN, Lajoie CA, Meyers AJ, Gregory IR, Stapleton RD, Taylor DE, Sayler GS	Appl Environ Microbiol	10.1128/AEM.66.3.1167-1174.2000	2000	*

References

#915	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1869

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75666

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID125568.1 )

* These data were automatically processed and therefore are not curated

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