Name: Ancylobacter tetraedralis Z-2821
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6155

Type strain:

Species: Ancylobacter tetraedralis

Strain Designation: Z-2821

Culture col. no.: DSM 5895, BKM B-1335, VKM B-1335

Strain history: <- VKM; VKM B-1335 <- L. V. Vasilyeva, INMI; Z-2821. Produces two colony types.

NCBI tax ID(s): 217068 (species)

SI-ID 48021

DSM 5895, VKM B-1335

Section

Ancylobacter tetraedralis Z-2821 is a mesophilic, Gram-negative bacterium that was isolated from bog.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Xanthobacteraceae*
	Genus	*Ancylobacter*
	Species	**Ancylobacter tetraedralis**
	Full Scientific Name (LPSN)	Ancylobacter tetraedralis (Vasil'eva et al. 1986) Doronina et al. 2023

Synonym

Angulomicrobium tetraedrale

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.959

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2152]

Culture medium

MMB MEDIUM (DSMZ Medium 628)

[Ref.: #2152]

Culture medium growth

[Ref.: #2152]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2152]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2152]			growth	28 °C

[Ref.: #2152]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.991

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2152]	Sample type/isolated from	bog
[Ref.: #2152]	Geographic location (country and/or sea, region)	Moscow region, Abramtsevo
[Ref.: #2152]	Country	Russia
[Ref.: #2152]	Country ISO 3 Code	RUS
[Ref.: #2152]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Wetland (Swamp)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ535708 (>99% sequence identity) for Xanthobacteraceae from Microbeatlas

Aquatic Samples	52
Soil Samples	12
Animal Samples	170
Plant Samples	24
Total Samples	258

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2152]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2152]	Angulomicrobium tetraedrale 16S rRNA gene, type strain DSM 5895T	AJ535708	1407	ENA	217068 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Angulomicrobium tetraedrale DSM 5895	GCA_014195655	scaffold	GenBank	217068 tax ID	*
[Ref.: #66792]	Angulomicrobium tetraedrale strain DSM 5895	217068.3	wgs	PATRIC	217068 tax ID	*
[Ref.: #66792]	Angulomicrobium tetraedrale DSM 5895	2827996806	draft	JGI IMG/M	217068 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Angulomicrobium tetraedrale DSM 5895 NCBI: GCA_014195655.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Angulomicrobium tetraedrale DSM 5895 NCBI: GCA_014195655.1
[Ref.: #69480]	flagellated	no	95.142	no
[Ref.: #69480]	gram-positive	no	97.975	no
[Ref.: #69480]	anaerobic	no	98.327	no
[Ref.: #69480]	aerobic	yes	91.588	no
[Ref.: #69480]	halophile	no	90.74	no
[Ref.: #69480]	spore-forming	no	96.043	no
[Ref.: #69480]	glucose-util	yes	91.438	no
[Ref.: #69480]	thermophile	no	97.061	yes
[Ref.: #69480]	motile	no	91.649	no
[Ref.: #69480]	glucose-ferment	no	90.531	no

Availability in culture collections External links

[Ref.: #2152]

Culture collection no.

DSM 5895, BKM B-1335, VKM B-1335

[Ref.: #75641]

SI-ID 48021

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenetic relationships of the genera Stella, Labrys and Angulomicrobium within the 'Alphaproteobacteria' and description of Angulomicrobium amanitiforme sp. nov.	Fritz I, Strompl C, Abraham WR	Int J Syst Evol Microbiol	10.1099/ijs.0.02746-0	2004	*

References

#2152

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5895

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75641

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48021.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Angulomicrobium tetraedrale in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Angulomicrobium tetraedrale DSM 5895

Angulomicrobium tetraedrale DSM 5895

Change proposal

Change proposal