Name: Heliobacterium chlorum Gest/Favinger
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6121

Type strain:

Species: Heliobacterium chlorum

Strain Designation: Gest/Favinger

Culture col. no.: DSM 3682, ATCC 35205

Strain history: <- ATCC <- H. Gest, strain Gest/Favinger

NCBI tax ID(s): 2698 (species)

SI-ID 47747

DSM 3682, ATCC 35205

Section

Heliobacterium chlorum Gest/Favinger is an anaerobe, spore-forming, mesophilic bacterium that was isolated from soil.

motile
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Heliobacteriaceae*
	Genus	*Heliobacterium*
	Species	**Heliobacterium chlorum**
	Full Scientific Name (LPSN)	Heliobacterium chlorum Gest and Favinger 1985

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.686

[Ref.: #69480]	Motility	yes Confidence in %92.099

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1455]

Culture medium

HELIOBACTERIUM CHLORUM MEDIUM (DSMZ Medium 370)

[Ref.: #1455]

Culture medium growth

[Ref.: #1455]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1455]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1455]			growth	35 °C

[Ref.: #1455]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1455]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.752

[Ref.: #69480]

Ability of spore formation

yes Confidence in %100

[Ref.: #1455]

Name of produced compound

bacteriochlorophyll g

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1455]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence M11212 (>99% sequence identity) for Heliobacterium chlorum subclade from Microbeatlas

Aquatic Samples	85
Soil Samples	53
Animal Samples	6202
Plant Samples	20
Total Samples	6360

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1455]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Heliobacterium chlorum 16S ribosomal RNA	M11212	1512	ENA	2698 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Heliobacterium chlorum DSM 3682	GCA_014502795	contig	GenBank	2698 tax ID	*
[Ref.: #66792]	Heliobacterium chlorum strain DSM 3682	2698.4	wgs	PATRIC	2698 tax ID	*

[Ref.: #1455]

GC-content

52.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Heliobacterium chlorum strain DSM 3682 PATRIC: 2698.4
[Ref.: #69481]	spore-forming	no	50	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Heliobacterium chlorum strain DSM 3682 PATRIC: 2698.4
[Ref.: #69480]	motile	yes	83.623	no
[Ref.: #69480]	gram-positive	no	81.221	no
[Ref.: #69480]	anaerobic	yes	98.292	yes
[Ref.: #69480]	halophile	no	96.871	no
[Ref.: #69480]	spore-forming	yes	93.461	no
[Ref.: #69480]	glucose-util	yes	75.851	no
[Ref.: #69480]	aerobic	no	94.281	yes
[Ref.: #69480]	flagellated	no	75.776	no
[Ref.: #69480]	thermophile	no	96.08	no
[Ref.: #69480]	glucose-ferment	no	85.486	no

Availability in culture collections External links

[Ref.: #1455]

Culture collection no.

DSM 3682, ATCC 35205

[Ref.: #75608]

SI-ID 47747

References

#1455

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3682

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75608

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47747.1 )

* These data were automatically processed and therefore are not curated

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Heliobacterium chlorum strain DSM 3682

Heliobacterium chlorum strain DSM 3682

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