Name: Sulfurovum lithotrophicum 42BKT
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6117

Type strain:

Species: Sulfurovum lithotrophicum

Strain Designation: 42BKT

Culture col. no.: DSM 23290, ATCC BAA-797, JCM 12117

Strain history: F. Inagaki 42BKT.

NCBI tax ID(s): 206403 (species)

SI-ID 134309

ATCC BAA-797, JCM 12117, DSM 23290

Section

Sulfurovum lithotrophicum 42BKT is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from marine sediment.

Gram-negative
ovoid-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Helicobacteraceae*
	Genus	*Sulfurovum*
	Species	**Sulfurovum lithotrophicum**
	Full Scientific Name (LPSN)	Sulfurovum lithotrophicum Inagaki et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #30186]	Gram stain	negative

[Ref.: #30186]	Cell length	0.5-1.2 µm

[Ref.: #30186]	Cell width	0.4-0.8 µm

[Ref.: #30186]	Cell shape	ovoid-shaped

[Ref.: #30186]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16777]

Culture medium

SULFURIMONAS MJ MEDIUM (DSMZ Medium 1011)

[Ref.: #16777]

Culture medium growth

[Ref.: #16777]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16777]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16777]	growth	28 °C
[Ref.: #30186]	growth	10-40 °C
[Ref.: #30186]	optimum	29 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #16777]	Temperature range	mesophilic
[Ref.: #30186]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30186]			optimum	6.75
[Ref.: #30186]			growth	4.5-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16777]	Oxygen tolerance	anaerobe
[Ref.: #30186]	Oxygen tolerance	anaerobe

[Ref.: #30186]

Ability of spore formation

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16777]	Sample type/isolated from	marine sediment
[Ref.: #16777]	Geographic location (country and/or sea, region)	Mid-Okinawa Trough, Iheya North hydrothermal system
[Ref.: #16777]	Country	Japan
[Ref.: #16777]	Country ISO 3 Code	JPN
[Ref.: #16777]	Continent	Asia
[Ref.: #16777]	Geographic location	27.7833°/126.9000°

[Ref.: #67770]	Sample type/isolated from	Gas-bubbling sediment at the Iheya hydrothermal system in the mid-Okinawa Trough
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB091292 (>99% sequence identity) for Sulfurovum lithotrophicum from Microbeatlas

Aquatic Samples	65
Soil Samples	8
Animal Samples
Plant Samples
Total Samples	73

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16777]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16777]	Sulfurovum lithotrophicum gene for 16S ribosomal RNA, partial sequence	AB091292	1406	ENA	206403 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sulfurovum lithotrophicum ATCC BAA-797	GCA_000987835	complete	GenBank	206403 tax ID

[Ref.: #16777]	GC-content	48.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30186]	GC-content	48 mol%
[Ref.: #67770]	GC-content	48 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #16777]

Culture collection no.

DSM 23290, ATCC BAA-797, JCM 12117

[Ref.: #75604]

SI-ID 134309

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of the sulfur-oxidizing chemolithoautotrophic Sulfurovum lithotrophicum 42BKT(T).	Jeon W, Priscilla L, Park G, Lee H, Lee N, Lee D, Kwon H, Ahn I, Lee C, Lee H, Ahn J	Stand Genomic Sci	10.1186/s40793-017-0265-z	2017	*
Phylogeny	Sulfurovum riftiae sp. nov., a mesophilic, thiosulfate-oxidizing, nitrate-reducing chemolithoautotrophic epsilonproteobacterium isolated from the tube of the deep-sea hydrothermal vent polychaete Riftia pachyptila.	Giovannelli D, Chung M, Staley J, Starovoytov V, Le Bris N, Vetriani C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001106	2016	*
Phylogeny	Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the epsilon-Proteobacteria isolated from Okinawa Trough hydrothermal sediments.	Inagaki F, Takai K, Nealson KH, Horikoshi K	Int J Syst Evol Microbiol	10.1099/ijs.0.03042-0	2004	*

References

#16777

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23290

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30186

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26534 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75604

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134309.1 )

#26534

IJSEM 1477 2004 ( DOI 10.1099/ijs.0.03042-0 , PubMed 15388698 )

* These data were automatically processed and therefore are not curated

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