Name: Wolinella succinogenes DSM 1740
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6116

Type strain:

Species: Wolinella succinogenes

Culture col. no.: DSM 1740, ATCC 29543, JCM 31913, CCUG 13145, CCUG 12550, LMG 7466, CIP 103760, KCTC 5018, LMG 7608, NCTC 11488

Strain history: DSM 1740 <-- H. Biebl <-- M. P. Bryant <-- M. J. Wolin.

NCBI tax ID(s): 273121 (strain), 844 (species)

SI-ID 13878

LMG 7466, ATCC 29543, CCUG 12550, CCUG 13145, DSM 1740, LMG 7139, LMG 7463, LMG 7608, NCTC 11488, CIP 103760, KCTC 5018

Section

Wolinella succinogenes DSM 1740 is an anaerobe, mesophilic, motile bacterium that was isolated from bovine rumen fluid.

motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Helicobacteraceae*
	Genus	*Wolinella*
	Species	**Wolinella succinogenes**
	Full Scientific Name (LPSN)	Wolinella succinogenes (Wolin et al. 1961) Tanner et al. 1981

Synonym

Vibrio succinogenes

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #69480]	Motility	yes Confidence in %93.871

Information on culture and growth conditions Culture and growth conditions

[Ref.: #895]

Culture medium

WOLINELLA SUCCINOGENES MEDIUM (DSMZ Medium 157)

[Ref.: #895]

Culture medium growth

[Ref.: #895]

Culture medium link

Medium recipe at MediaDive

[Ref.: #895]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #895]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #895]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #895]	Oxygen tolerance	anaerobe
[Ref.: #45898]	Oxygen tolerance	anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.967

[Ref.: #895]

Name of produced compound

L asparaginase

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	tetrahydrofolate metabolism	100	14 of 14
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	83.33	5 of 6
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	methylglyoxal degradation	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glutamate and glutamine metabolism	71.43	20 of 28
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	purine metabolism	68.09	64 of 94
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	flavin biosynthesis	66.67	10 of 15
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	pyrimidine metabolism	64.44	29 of 45
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	gluconeogenesis	62.5	5 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	phenylalanine metabolism	61.54	8 of 13
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	citric acid cycle	57.14	8 of 14
[Ref.: #66794]	lysine metabolism	57.14	24 of 42
[Ref.: #66794]	oxidative phosphorylation	56.04	51 of 91
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	proline metabolism	54.55	6 of 11
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	polyamine pathway	52.17	12 of 23
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	histidine metabolism	48.28	14 of 29
[Ref.: #66794]	tryptophan metabolism	47.37	18 of 38
[Ref.: #66794]	non-pathway related	47.37	18 of 38
[Ref.: #66794]	glycolysis	47.06	8 of 17
[Ref.: #66794]	arginine metabolism	45.83	11 of 24
[Ref.: #66794]	CO2 fixation in Crenarchaeota	44.44	4 of 9
[Ref.: #66794]	degradation of hexoses	44.44	8 of 18
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	starch degradation	40	4 of 10
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	ketogluconate metabolism	37.5	3 of 8
[Ref.: #66794]	pentose phosphate pathway	36.36	4 of 11
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	L-lactaldehyde degradation	33.33	1 of 3
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	propionate fermentation	30	3 of 10
[Ref.: #66794]	lipid metabolism	29.03	9 of 31
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	25	2 of 8
[Ref.: #66794]	butanoate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	degradation of pentoses	25	7 of 28
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #895]	Sample type/isolated from	bovine rumen fluid
[Ref.: #895]	Geographic location (country and/or sea, region)	Illinois, Urbana
[Ref.: #895]	Country	USA
[Ref.: #895]	Country ISO 3 Code	USA
[Ref.: #895]	Continent	North America

[Ref.: #45898]	Sample type/isolated from	Bovine rumen

[Ref.: #67770]	Sample type/isolated from	Bovine rumen fluid
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence M88159 (>99% sequence identity) for Wolinella succinogenes subclade from Microbeatlas

Aquatic Samples	796
Soil Samples	136
Animal Samples	1065
Plant Samples	24
Total Samples	2021

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #895]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #895]	Wolinella succinogenes strain ATCC 29543 16S ribosomal RNA, partial sequence	M88159	1481	ENA	844 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Wolinella succinogenes DSM 1740 DSMZ 1740	GCA_000196135	complete	GenBank	273121 tax ID	*
[Ref.: #66792]	Wolinella succinogenes NCTC11488	GCA_900637325	complete	GenBank	844 tax ID	*
[Ref.: #66792]	Wolinella succinogenes DSM 1740	273121.8	complete	PATRIC	273121 tax ID	*
[Ref.: #66792]	Wolinella succinogenes strain NCTC11488	844.5	complete	PATRIC	844 tax ID	*
[Ref.: #66792]	Wolinella succinogenes DSM 1740	637000341	complete	JGI IMG/M	273121 tax ID	*
[Ref.: #66792]	Wolinella succinogenes NCTC11488	2836966179	complete	JGI IMG/M	844 tax ID	*

[Ref.: #895]	GC-content	49.2 mol%
[Ref.: #67770]	GC-content	46 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Wolinella succinogenes DSM 1740 DSMZ 1740 NCBI: GCA_000196135.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Wolinella succinogenes DSM 1740 DSMZ 1740 NCBI: GCA_000196135.1
[Ref.: #69480]	motile	yes	92.617	no
[Ref.: #69480]	flagellated	yes	68.296	no
[Ref.: #69480]	gram-positive	no	99.258	no
[Ref.: #69480]	anaerobic	yes	86.658	yes
[Ref.: #69480]	aerobic	no	96.913	yes
[Ref.: #69480]	halophile	no	76.275	no
[Ref.: #69480]	spore-forming	no	93.949	no
[Ref.: #69480]	thermophile	no	58.64	no
[Ref.: #69480]	glucose-util	no	83.768	no
[Ref.: #69480]	glucose-ferment	no	89.145	no

Availability in culture collections External links

[Ref.: #895]

Culture collection no.

DSM 1740, ATCC 29543, JCM 31913, CCUG 13145, CCUG 12550, LMG 7466, CIP 103760, KCTC 5018, LMG 7608, NCTC 11488

[Ref.: #75603]

SI-ID 13878

Literature:

	Title	Authors	Journal	DOI	Year
Enzymology	Analysis of cell surface antigens of Campylobacter rectus.	Kaneko T	Bull Tokyo Dent Coll		1992	*
Phylogeny	Comparison of strains of gram-negative, anaerobic, agar-corroding rods isolated from soft tissue infections in cats and dogs with type strains of Bacteroides gracilis, Wolinella recta, Wolinella succinogenes, and Campylobacter concisus.	Love DN, Jones RF, Bailey M, Calverley A	J Clin Microbiol	10.1128/jcm.20.4.747-750.1984	1984	*
Enzymology	Differential characteristics of a small gram-negative anaerobe associated with non-gonococcal urethritis which morphologically resembles Bacteroides ureolyticus.	Fontaine EA, Borriello SP, Taylor-Robinson D, Davies HA	Scand J Urol Nephrol Suppl		1984	*
	Molecular signatures (unique proteins and conserved indels) that are specific for the epsilon proteobacteria (Campylobacterales).	Gupta RS	BMC Genomics	10.1186/1471-2164-7-167	2006	*

References

#895	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1740

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#45898 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 13145

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75603

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13878.1 )

* These data were automatically processed and therefore are not curated

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Wolinella succinogenes DSM 1740 DSMZ 1740

Wolinella succinogenes DSM 1740 DSMZ 1740

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