Name: Sulfurimonas paralvinellae GO25
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6115

Type strain:

Species: Sulfurimonas paralvinellae

Strain Designation: GO25

Culture col. no.: DSM 17229, JCM 13212

Strain history: K. Takai GO25.

NCBI tax ID(s): 317658 (species)

SI-ID 297342

DSM 17229, JCM 13212

Special Collections

Section

When using BacDive for research please cite our paper

Sulfurimonas paralvinellae GO25 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from nests of tube-dwelling polychaetes adjacent to deep-sea hydrothermal vents.

Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Helicobacteraceae*
	Genus	*Sulfurimonas*
	Species	**Sulfurimonas paralvinellae**
	Full Scientific Name (LPSN)	Sulfurimonas paralvinellae Takai et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31778]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %97.677

[Ref.: #31778]	Cell length	1.5-2.5 µm

[Ref.: #31778]	Cell width	0.6-0.8 µm

[Ref.: #31778]	Cell shape	rod-shaped

[Ref.: #31778]	Motility	yes

[Ref.: #31778]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6826]

Culture medium

SULFURIMONAS PARALVINELLA MEDIUM (DSMZ Medium 1053)

[Ref.: #6826]

Culture medium growth

[Ref.: #6826]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6826]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6826]	growth	30 °C
[Ref.: #31778]	growth	04-35 °C
[Ref.: #31778]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31778]			optimum	6.1
[Ref.: #31778]			growth	5.4-8.6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6826]	Oxygen tolerance	anaerobe
[Ref.: #31778]	Oxygen tolerance	facultative anaerobe

[Ref.: #31778]	Ability of spore formation	no
[Ref.: #125438]	Ability of spore formation	no Confidence in %93.95

[Ref.: #31778]

Observation

aggregates in chains

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31778]		nitrate ChEBI	+	reduction

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6826]	Sample type/isolated from	nests of tube-dwelling polychaetes adjacent to deep-sea hydrothermal vents
[Ref.: #6826]	Geographic location (country and/or sea, region)	Pacific Ocean, Mid-Okinawa Trough, Iheya North field
[Ref.: #6826]	Country	Japan
[Ref.: #6826]	Country ISO 3 Code	JPN
[Ref.: #6826]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Nest of hydrothermal vent polychaetes (Paralvinella sp.) at the Iheya North field in the Mid-Okinawa Trough
[Ref.: #67770]	Host species	Paralvinella sp.
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Host	#Invertebrates (Other)	#Annelida
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6826]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6826]	Sulfurimonas paralvinellae rrn gene for small subunit rRNA, partial sequence	AB252048	1445	GenBank ENA	317658 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sulfurimonas paralvinellae GO25	GCA_014905135	complete	GenBank ENA	317658 tax ID	*

[Ref.: #31778]	GC-content	37.6 mol%
[Ref.: #67770]	GC-content	37.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sulfurimonas paralvinellae GO25 NCBI: GCA_014905135.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.677	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	65.497	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	79.69	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	93.95	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	84.687	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	61.252	no

Availability in culture collections External links

[Ref.: #6826]

Culture collection no.

DSM 17229, JCM 13212

[Ref.: #75602]

SI-ID 297342

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sulfurimonas paralvinellae sp. nov., a novel mesophilic, hydrogen- and sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent polychaete nest, reclassification of Thiomicrospira denitrificans as Sulfurimonas denitrificans comb. nov. and emended description of the genus Sulfurimonas.	Takai K, Suzuki M, Nakagawa S, Miyazaki M, Suzuki Y, Inagaki F, Horikoshi K	Int J Syst Evol Microbiol	10.1099/ijs.0.64255-0	2006	*

References

#6826

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17229

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31778

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28051 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#75602

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297342.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#28051

IJSEM 1725 2006 ( DOI 10.1099/ijs.0.64255-0 , PubMed 16901999 )

* These data were automatically processed and therefore are not curated

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