Sulfurimonas autotrophica (DSM 16294, ATCC BAA-671, JCM 11897)

Cell morphology

Multimedia

• @ref:	66793
  multimedia content:	EM_DSM_16294_1.jpg
  multimedia.multimedia content:	EM_DSM_16294_1.jpg
  caption:	electron microscopic image
  intellectual property rights:	© HZI/Manfred Rohde
  manual_annotation:	1

Culture medium

@ref	Name	Growth	Medium link	Composition
6277	SULFURIMONAS MJ MEDIUM (DSMZ Medium 1011)		Medium recipe at MediaDive	Name: SULFURIMONAS MJ MEDIUM (DSMZ Medium 1011) Composition: MgCl2 x 6 H2O 4.13452 g/l NaHCO3 1.48368 g/l Na2S2O3 x 5 H2O 1.48368 g/l KCl 0.326409 g/l NH4Cl 0.24728 g/l K2HPO4 0.138477 g/l MgSO4 x 7 H2O 0.0296736 g/l Nitrilotriacetic acid 0.0148368 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.0098912 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l CoSO4 x 7 H2O 0.00178042 g/l ZnSO4 x 7 H2O 0.00178042 g/l CaCl2 x 2 H2O 0.00098912 g/l FeSO4 x 7 H2O 0.00098912 g/l NiCl2 x 6 H2O 0.000296736 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l CuSO4 x 5 H2O 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l H3BO3 9.8912e-05 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l Na2WO4 x 2 H2O 3.95648e-06 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water

Culture temp

Oxygen tolerance

Spore formation

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions	external links
66794	teichoic acid biosynthesis	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	CMP-KDO biosynthesis	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	denitrification	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	palmitate biosynthesis	95.45	21 of 22
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	d-mannose degradation	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	1,4-dihydroxy-6-naphthoate biosynthesis	83.33	5 of 6
66794	methylglyoxal degradation	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	hydrogen production	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	isoleucine metabolism	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	NAD metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	starch degradation	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	sulfate reduction	69.23	9 of 13
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	purine metabolism	67.02	63 of 94
66794	valine metabolism	66.67	6 of 9
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	serine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	nitrate assimilation	66.67	6 of 9
66794	flavin biosynthesis	66.67	10 of 15
66794	citric acid cycle	64.29	9 of 14
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	pyrimidine metabolism	62.22	28 of 45
66794	cellulose degradation	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	lipid metabolism	54.84	17 of 31
66794	proline metabolism	54.55	6 of 11
66794	methionine metabolism	53.85	14 of 26
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	vitamin B1 metabolism	53.85	7 of 13
66794	glycolysis	52.94	9 of 17
66794	polyamine pathway	52.17	12 of 23
66794	histidine metabolism	51.72	15 of 29
66794	alanine metabolism	51.72	15 of 29
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	lysine metabolism	50	21 of 42
66794	glycine metabolism	50	5 of 10
66794	selenocysteine biosynthesis	50	3 of 6
66794	phenylmercury acetate degradation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	ketogluconate metabolism	50	4 of 8
66794	arginine metabolism	50	12 of 24
66794	cysteine metabolism	50	9 of 18
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	non-pathway related	47.37	18 of 38
66794	tryptophan metabolism	44.74	17 of 38
66794	degradation of hexoses	44.44	8 of 18
66794	glutathione metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	gallate degradation	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	propionate fermentation	40	4 of 10
66794	coenzyme M biosynthesis	40	4 of 10
66794	oxidative phosphorylation	38.46	35 of 91
66794	leucine metabolism	38.46	5 of 13
66794	vitamin B12 metabolism	38.24	13 of 34
66794	vitamin B6 metabolism	36.36	4 of 11
66794	pentose phosphate pathway	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	formaldehyde oxidation	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	urea cycle	30.77	4 of 13
66794	Entner Doudoroff pathway	30	3 of 10
66794	propanol degradation	28.57	2 of 7
66794	degradation of pentoses	28.57	8 of 28
66794	cholesterol biosynthesis	27.27	3 of 11
66794	androgen and estrogen metabolism	25	4 of 16
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	degradation of sugar alcohols	25	4 of 16
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	ascorbate metabolism	22.73	5 of 22

Isolation source categories

Isolation

Taxonmaps

69479

Global distribution of 16S sequence AB088431 (>99% sequence identity) for Sulfurimonas autotrophica subclade from Microbeatlas

Aquatic Samples	1372
Soil Samples	81
Animal Samples	25
Plant Samples	13
Total Samples	1491

Risk assessment

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM14735v1 assembly for Sulfurimonas autotrophica DSM 16294	complete	GCA_000147355	563040.3	648028058	563040	97.73

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6277	Sulfurimonas autotrophica gene for 16S rRNA, partial sequence, strain:OK10	AB088431	1437		563040

GC content

Predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Novel M23 peptidases Pgp4, Pgp5, and Pgp6 contribute to helical cell shape in Campylobacter jejuni.	Lin CS, Vermeulen J, Biboy J, Gaynor EC, Vollmer W, Frirdich E.	Front Microbiol	10.3389/fmicb.2025.1641976	2025
	FlgV forms a flagellar motor ring that is required for optimal motility of Helicobacter pylori.	Botting JM, Tachiyama S, Gibson KH, Liu J, Starai VJ, Hoover TR.	PLoS One	10.1371/journal.pone.0287514	2023
Metabolism	Capturing Compositional Variation in Denitrifying Communities: a Multiple-Primer Approach That Includes Epsilonproteobacteria.	Murdock SA, Juniper SK.	Appl Environ Microbiol	10.1128/aem.02753-16	2017
	Comparative analysis of amino acid sequences from mesophiles and thermophiles in respective of carbon-nitrogen hydrolase family.	Devi S, Sharma N, Savitri, Bhalla TC.	3 Biotech	10.1007/s13205-012-0111-3	2013
Metabolism	Complete genome sequence of Sulfurimonas autotrophica type strain (OK10).	Sikorski J, Munk C, Lapidus A, Ngatchou Djao OD, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Han C, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Sims D, Meincke L, Brettin T, Detter JC, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Lang E, Spring S, Goker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.	Stand Genomic Sci	10.4056/sigs.1173118	2010
	Regulation of Respiratory Pathways in Campylobacterota: A Review.	van der Stel AX, Wosten MMSM.	Front Microbiol	10.3389/fmicb.2019.01719	2019
	Disproportionation of Inorganic Sulfur Compounds by Mesophilic Chemolithoautotrophic Campylobacterota.	Wang S, Jiang L, Xie S, Alain K, Wang Z, Wang J, Liu D, Shao Z.	mSystems	10.1128/msystems.00954-22	2023
Phylogeny	A proposed genus boundary for the prokaryotes based on genomic insights.	Qin QL, Xie BB, Zhang XY, Chen XL, Zhou BC, Zhou J, Oren A, Zhang YZ.	J Bacteriol	10.1128/jb.01688-14	2014
	Effects of Hemagglutination Activity in the Serum of a Deep-Sea Vent Endemic Crab, Shinkaia Crosnieri, on Non-Symbiotic and Symbiotic Bacteria.	Fujiyoshi S, Tateno H, Watsuji T, Yamaguchi H, Fukushima D, Mino S, Sugimura M, Sawabe T, Takai K, Sawayama S, Nakagawa S.	Microbes Environ	10.1264/jsme2.me15066	2015
Metabolism	Distribution of glucan-branching enzymes among prokaryotes.	Suzuki E, Suzuki R.	Cell Mol Life Sci	10.1007/s00018-016-2243-9	2016
Metabolism	CO synthesized from the central one-carbon pool as source for the iron carbonyl in O2-tolerant [NiFe]-hydrogenase.	Burstel I, Siebert E, Frielingsdorf S, Zebger I, Friedrich B, Lenz O.	Proc Natl Acad Sci U S A	10.1073/pnas.1614656113	2016
Pathogenicity	Natural hot spots for gain of multiple resistances: arsenic and antibiotic resistances in heterotrophic, aerobic bacteria from marine hydrothermal vent fields.	Farias P, Espirito Santo C, Branco R, Francisco R, Santos S, Hansen L, Sorensen S, Morais PV.	Appl Environ Microbiol	10.1128/aem.03240-14	2015
Enzymology	Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.	Gregersen LH, Bryant DA, Frigaard NU.	Front Microbiol	10.3389/fmicb.2011.00116	2011
	Quorum sensing dependent phenotypes and their molecular mechanisms in Campylobacterales.	Golz G, Sharbati S, Backert S, Alter T.	Eur J Microbiol Immunol (Bp)	10.1556/eujmi.2.2012.1.8	2012
	Diversity and phylogenetic analyses of bacteria from a shallow-water hydrothermal vent in Milos island (Greece).	Giovannelli D, d'Errico G, Manini E, Yakimov M, Vetriani C.	Front Microbiol	10.3389/fmicb.2013.00184	2013
	Evolution of the B-Block Binding Subunit of TFIIIC That Binds to the Internal Promoter for RNA Polymerase III.	Matsutani S.	Int J Evol Biol	10.1155/2014/609865	2014
	Sulfurimonas microaerophilic sp. nov. and Sulfurimonas diazotrophicus sp. nov.: Two Novel Nitrogen-Fixing and Hydrogen- and Sulfur-Oxidizing Chemolithoautotrophs Within the Campylobacteria Isolated from Mangrove Sediments.	Zhong Y, Li Y, Wang Z, Cui L, Lv S, Zhu H, Yuan Q, Lai Q, Wang S, Jiang L.	Microorganisms	10.3390/microorganisms13040713	2025
Phylogeny	Sulfurimonas paralvinellae sp. nov., a novel mesophilic, hydrogen- and sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent polychaete nest, reclassification of Thiomicrospira denitrificans as Sulfurimonas denitrificans comb. nov. and emended description of the genus Sulfurimonas.	Takai K, Suzuki M, Nakagawa S, Miyazaki M, Suzuki Y, Inagaki F, Horikoshi K.	Int J Syst Evol Microbiol	10.1099/ijs.0.64255-0	2006
Genetics	Non-contiguous finished genome sequence and description of Sulfurimonas hongkongensis sp. nov., a strictly anaerobic denitrifying, hydrogen- and sulfur-oxidizing chemolithoautotroph isolated from marine sediment.	Cai L, Shao MF, Zhang T.	Stand Genomic Sci	10.4056/sigs.4948668	2014
Phylogeny	Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing epsilon-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough.	Inagaki F, Takai K, Kobayashi H, Nealson KH, Horikoshi K	Int J Syst Evol Microbiol	10.1099/ijs.0.02682-0	2003