Name: Helicobacter marmotae DSM 22879
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6107

Type strain:

Species: Helicobacter marmotae

Culture col. no.: DSM 22879, ATCC BAA-546, CCUG 52419, MIT 98-6070

Strain history: <- CCUG <- Z. Shen, Massachusetts Inst. Technology, Cambridge, USA <- S. Xu

NCBI tax ID(s): 152490 (species)

SI-ID 297224

ATCC BAA-546, CCUG 52419, DSM 22879

Section

Helicobacter marmotae DSM 22879 is an anaerobe, mesophilic animal pathogen that was isolated from liver of a woodchuck infected with WHV.

anaerobe
animal pathogen
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Helicobacteraceae*
	Genus	*Helicobacter*
	Species	**Helicobacter marmotae**
	Full Scientific Name (LPSN)	Helicobacter marmotae Fox et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #16600]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16600]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16600]

Culture medium growth

[Ref.: #16600]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16600]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16600]			growth	37 °C
[Ref.: #59543]			growth	37 °C

[Ref.: #16600]	Temperature range	mesophilic
[Ref.: #59543]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16600]	Oxygen tolerance	anaerobe
[Ref.: #59543]	Oxygen tolerance	microaerophile

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68373]	acetate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	citrate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	D-glucose ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	hippurate ChEBI	-	hydrolysis	* from API CAM
[Ref.: #68373]	malate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	nitrate ChEBI	+	reduction	* from API CAM
[Ref.: #68373]	propionate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	succinate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	triphenyltetrazolium chloride ChEBI	+	reduction	* from API CAM
[Ref.: #68373]	urea ChEBI	+	hydrolysis	* from API CAM

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #68373]	cefazolin ChEBI	yes	224	µg	* from API CAM
[Ref.: #68373]	erythromycin ChEBI	yes	14	µg	* from API CAM
[Ref.: #68373]	nalidixic acid ChEBI	yes	84	µg	* from API CAM

	Metabolite production	Metabolite	Production
[Ref.: #68373]		hydrogen sulfide ChEBI	no	* from API CAM

	Enzyme	Enzyme activity	EC number
[Ref.: #68373]	alkaline phosphatase	+	3.1.3.1	* from API CAM
[Ref.: #16600]	catalase	+	1.11.1.6
[Ref.: #68373]	catalase	+	1.11.1.6	* from API CAM
[Ref.: #68373]	gamma-glutamyltransferase	-	2.3.2.2	* from API CAM
[Ref.: #68373]	L-aspartate arylamidase	-	3.4.11.21	* from API CAM
[Ref.: #68373]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API CAM
[Ref.: #68373]	urease	+	3.5.1.5	* from API CAM

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #59543]

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	29.6	17.824
C16:0	25.6	16
C17:1 ISO I/C16:0 DMA	14.3	16.481
C14:0	10.7	14
C12:0	3.6	12
C13:1 at 12-13	3.4	12.931
C16:0 3OH	3.2	17.52
C16:0 aldehyde	2.5	14.949
C12:0 3OH	1.2	13.455
C18:0	1.2	18
C14:0 ISO	0.9	13.618
C18:1 ISO H	0.8	17.46
C18:1 ω7c DMA	0.7	18.282
C16:0 iso	0.5	15.626
C18:2 ω6,9c/C18:0 ANTE	0.4	17.724
C15:0	0.3	15
C17:0	0.3	17
C16:1 ω7c	0.3	15.819
C14:0 3OH/C16:1 ISO I	0.3	15.485
unknown 12.486	0.3	12.486

API® CAM:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Reduction of nitrateNIT	EsteraseEST	Hippuric acidHIP	gamma-Glutamyl transferaseGGT	Reduction of Triphenyl tetrazolium chlorideTTC	Pyrrolidonyl arylamidasePYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	Alkaline phosphatasePAL	H2S productionH2S	Assimilation of D-glucoseGLU	Assimilation of succinateSUT	Growth inhibitionNAL	Growth inhibitionCFZ	Assimilation of acetateACE	Assimilation of propionic acidPROP	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Erythromycin resistance (+) sensitivity (-)ERO	CatalaseCAT
[Ref.: #16600]	3784	+	+	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+
[Ref.: #16600]	3783	+	+	+	-	-	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16600]	Sample type/isolated from	liver of a woodchuck infected with WHV
[Ref.: #16600]	Country	USA
[Ref.: #16600]	Country ISO 3 Code	USA
[Ref.: #16600]	Continent	North America

[Ref.: #59543]	Sample type/isolated from	Woodchuck
[Ref.: #59543]	Sampling date	1997-06-18
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host	#Mammals	#Rodentia (Other)
#Host Body-Site	#Organ	#Liver

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF333341 (>99% sequence identity) for Helicobacter marmotae subclade from Microbeatlas

Aquatic Samples	3
Soil Samples	4
Animal Samples	251
Plant Samples
Total Samples	258

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16600]	Pathogenicity (animal)	yes
[Ref.: #16600]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16600]	Helicobacter sp. MIT 98-6070 16S ribosomal RNA gene, partial sequence	AF333341	1473	ENA	152490 tax ID

Availability in culture collections External links

[Ref.: #16600]

Culture collection no.

DSM 22879, ATCC BAA-546, CCUG 52419, MIT 98-6070

[Ref.: #75594]

SI-ID 297224

References

#16600

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22879

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#59543 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52419

#68373

Automatically annotated from API CAM .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75594

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297224.1 )

* These data were automatically processed and therefore are not curated

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