Helicobacter cinaedi (DSM 5359, ATCC 35683, CCUG 18818)

Name: Helicobacter cinaedi (DSM 5359, ATCC 35683, CCUG 18818)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6098

Type strain

Strain Designation Fennel 165

Culture col. no. DSM 5359 ATCC 35683 CCUG 18818 LMG 7543 NCTC 12423 2 more

NCBI tax ID(s) 537971 213

Special Collections DSMZ CCUG CIP

History DSMZ <- BCCM; LMG 7543 <- CCUG; CCUG 18818 <- C.L. Flennel; Fennel 165 CIP <- 1994, CCUG <- 1986, C.L. Fennell, Seattle, USA: strain 165, Campylobacter cinaedi

Links

Helicobacter cinaedi Fennel 165 is a microaerophile, Gram-negative, motile human pathogen that was isolated from human male; rectal swab.

Gram-negative motile rod-shaped microaerophile human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 2993

LMG 7543,ATCC 35683,CCUG 18818,DSM 5359,LMG 12184,NCTC 12423,CIP 103752,ATCC BAA-847

@ref 20215

Last LPSN update 2026-05-29 08:26:19

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Helicobacteraceae

Genus Helicobacter

Species Helicobacter cinaedi

Full scientific name Helicobacter cinaedi (Totten et al. 1988) Vandamme et al. 1991

Synonyms (1)

Campylobacter cinaedi

BacDive ID	Other strains from **Helicobacter cinaedi** (15)	Type strain
138200	H. cinaedi CIP 105344, CCUG 46353
138205	H. cinaedi B1205, CIP 105369, CCUG 15432, LMG 8559
138206	H. cinaedi 86-8853, CIP 105370, CCUG 19503, LMG 8778, ...
143202	H. cinaedi CCUG 17733, LMG 6729, LMG 8558
143385	H. cinaedi CCUG 18819, LMG 7544, LMG 9071
143450	H. cinaedi CCUG 19218, LMG 8770
143475	H. cinaedi CCUG 19504, LMG 8779, LMG 9072
143642	H. cinaedi CCUG 20698, CCUG 19562, NCTC 11960, LMG 9153
147562	H. cinaedi CCUG 33804, ATCC 51800
149115	H. cinaedi CCUG 36876
149901	H. cinaedi CCUG 38648
150501	H. cinaedi CCUG 41437
151238	H. cinaedi CCUG 43521
151239	H. cinaedi CCUG 43522
151726	H. cinaedi CCUG 44719

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
118282	negative	rod-shaped
125438	negative			97.955

Colony morphology

46903

Incubation period5 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2001	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
38146	MEDIUM 45 - for Columbia agar with sheep blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
118282	CIP Medium 45	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
2001	positive	growth	37
38146	positive	growth	37
46903	positive	growth	37
118282	positive	growth	37
118282	negative	growth	10
118282	negative	growth	30
118282	negative	growth	41
118282	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
2001	microaerophile
46903	microaerophile

Spore formation

@ref	Spore formation	Confidence
125439		99.056
125438		93.812

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
118282	606565 ChEBI	hippurate	+	hydrolysis
118282	17632 ChEBI	nitrate	+	reduction
118282	16301 ChEBI	nitrite	-	reduction
118282	132112 ChEBI	sodium thiosulfate	-	builds gas from
68373	30031 ChEBI	succinate	-	assimilation	from API CAM
68373	16199 ChEBI	urea	-	hydrolysis	from API CAM

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
68373	474053	cefazolin	224 µg	from API CAM
68373	48923	erythromycin	14 µg	from API CAM
68373	100147	nalidixic acid	84 µg	from API CAM

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68373	16136 ChEBI	hydrogen sulfide		from API CAM
118282	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
2001	catalase	+	1.11.1.6
118282	catalase	+	1.11.1.6
2001	cytochrome-c oxidase	-	1.9.3.1
68373	gamma-glutamyltransferase	-	2.3.2.2	from API CAM
118282	gelatinase	-
68373	L-aspartate arylamidase	-	3.4.11.21	from API CAM
118282	oxidase	+
118282	urease	-	3.5.1.5
68373	urease	-	3.5.1.5	from API CAM

Fatty acid profile

Metadata FA analysis

@ref

46903

Fatty acid	Percentage	ECL
C16:0	30.7	16
C14:0	29	14
C18:1 ω7c /12t/9t	19.9	17.824
C12:0	6.8	12
C16:0 3OH	3.2	17.52
C12:0 3OH	2.7	13.455
C18:2 ω6,9c/C18:0 ANTE	1.6	17.724
C15:0	1.2	15
C14:0 ISO	1.1	13.618
C16:1 ω7c	0.7	15.819
unknown 12.486	0.6	12.486
C13:0	0.5	13
C13:0 ISO 2OH	0.4	13.814
C18:0	0.4	18
Unidentified	0.4	15.941
Unidentified	0.4	17.473
C16:0 iso	0.3	15.626
C17:0	0.3	17

API CAM

@ref	URE	Reduction of nitrateNIT	EsteraseEST	HIP	GGT	TTC	PYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	PAL	H2S productionH2S	GLU	SUT	NAL	CFZ	ACE	PROP	MLT	CIT	Erythromycin resistance (+) sensitivity (-)ERO	CAT
2001	-	-	-	-	-	-	-	-	-	+/-	-	+/-	-	-	-	-	-	-	-	-	+
46903	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-
46903	-	+	+	-	-	+	+	+	-	+	-	-	-	-	-	-	+	-	-	-	+
46903	-	+	+	-	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-
2001	-	+	-	+/-	-	+	-	+	-	+	-	-	-	-	-	-	+	+/-	+	-	+
2001	-	+	+	-	-	+	+	-	-	-	-	+	-	-	-	+/-	+/-	-	-	-	+
2001	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+
2001	-	+	-	-	-	-	-	+/-	-	+	-	-	-	-	-	-	-	-	-	-	+
2001	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Infection	#Patient	#Swab
#Host Body-Site	#Gastrointestinal tract	#Rectum
#Host	#Human	#Male

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
2001	human male; rectal swab	Homo sapiens	Seattle	USA	USA	North America	47.61	-122.34 47.61/-122.34
46903	Human rectal swab	Homo sapiens	Seattle	USA	USA	North America
118282	Human, Homosexual man, rectal swab	Homo sapiens	Seattle, Washington	United States of America	USA	North America

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
2001			2	Risk group (German classification) According to TRBA 466
118282			2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM34997v1 assembly for Helicobacter cinaedi CCUG 18818 = ATCC BAA-847	complete	GCA_000349975	1206745.3	2554235363	537971	94.9
66792	ASM15547v1 assembly for Helicobacter cinaedi CCUG 18818 = ATCC BAA-847	scaffold	GCA_000155475	537971.5	643886141	537971	60.31
66792	ASM1797949v1 assembly for Helicobacter cinaedi DSM 5359	contig	GCA_017979495	213.64	8118322096	213	45.51
66792	ASM321561v1 assembly for Helicobacter cinaedi CCUG 18818 = ATCC BAA-847	contig	GCA_003215615	537971.15	8007011391	537971	30.34

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Helicobacter fennelliae strain ATCC 35683 16S ribosomal RNA gene, partial sequence	AF348745	1676	215
20218	Helicobacter cinaedi gene for 16S rRNA, partial sequence, strain: PAGU0597 (= CCUG18818)	AB275317	1430	213
20218	Helicobacter cinaedi strain CCUG 18818 16S ribosomal RNA gene, partial sequence	AF348748	1327	537971
2001	Helicobacter cinaedi strain CCUG 18818 16S ribosomal RNA gene, partial sequence	M88150	1473	537971

GC content

@ref	GC-content (mol%)	Method
2001	36.1	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM15547v1 assembly for Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
BV-BRC: 537971.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	71.14	no
125439	gram_stain	BacteriaNetⓘ	negative	74.55	no
125439	motility	BacteriaNetⓘ	no	87.91	no
125439	spore_formation	BacteriaNetⓘ	no	99.06	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 ATCC BAA-847
NCBI: GCA_000349975.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.96	no
125438	anaerobic	anaerobicⓘ	no	74.50	yes
125438	aerobic	aerobicⓘ	no	84.16	yes
125438	spore-forming	spore-formingⓘ	no	93.81	no
125438	thermophilic	thermophileⓘ	no	81.58	yes
125438	flagellated	motile2+ⓘ	yes	66.46	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Helicobacter cinaedi bacterium association with atherosclerosis and other diseases.	Voronina AK, Arapidi GP.	Front Microbiol	10.3389/fmicb.2024.1371717	2024
	Improved Quantitative Real-Time PCR Protocol for Detection and Quantification of Methanogenic Archaea in Stool Samples.	Cisek AA, Bak I, Cukrowska B.	Microorganisms	10.3390/microorganisms11030660	2023
Enzymology	Microorganisms Involved in Hydrogen Sink in the Gastrointestinal Tract of Chickens.	Cisek AA, Dolka B, Bak I, Cukrowska B.	Int J Mol Sci	10.3390/ijms24076674	2023
	vacA genotypes and genetic diversity in clinical isolates of Helicobacter pylori.	Han SR, Schreiber HJ, Bhakdi S, Loos M, Maeurer MJ.	Clin Diagn Lab Immunol	10.1128/cdli.5.2.139-145.1998	1998
Enzymology	Evaluation of a Novel Stool Antigen Rapid Test Kit for Detection of Helicobacter pylori Infection.	Kakiuchi T, Okuda M, Hashiguchi K, Imamura I, Nakayama A, Matsuo M.	J Clin Microbiol	10.1128/jcm.01825-18	2019
Phylogeny	Rapid identification of Campylobacter, Arcobacter, and Helicobacter isolates by PCR-restriction fragment length polymorphism analysis of the 16S rRNA gene.	Marshall SM, Melito PL, Woodward DL, Johnson WM, Rodgers FG, Mulvey MR.	J Clin Microbiol	10.1128/jcm.37.12.4158-4160.1999	1999
	Production and application of new monoclonal antibodies specific for a fecal Helicobacter pylori antigen.	Suzuki N, Wakasugi M, Nakaya S, Okada K, Mochida R, Sato M, Kajiyama H, Takahashi R, Hirata H, Ezure Y, Koga Y, Fukuda Y, Shimoyama T.	Clin Diagn Lab Immunol	10.1128/cdli.9.1.75-78.2002	2002
Phylogeny	Identification of Campylobacter jejuni, C. coli, C. lari, C. upsaliensis, arcobacter butzleri, and A. butzleri-like species based on the glyA gene.	Al Rashid ST, Dakuna I, Louie H, Ng D, Vandamme P, Johnson W, Chan VL.	J Clin Microbiol	10.1128/jcm.38.4.1488-1494.2000	2000
Phylogeny	Genotypic and phenotypic characterization of Helicobacter cinaedi and Helicobacter fennelliae strains isolated from humans and animals.	Kiehlbauch JA, Brenner DJ, Cameron DN, Steigerwalt AG, Makowski JM, Baker CN, Patton CM, Wachsmuth IK.	J Clin Microbiol	10.1128/jcm.33.11.2940-2947.1995	1995
Enzymology	Recurrent bacteremia caused by a "Flexispira"-like organism in a patient with X-linked (Bruton's) agammaglobulinemia.	Weir S, Cuccherini B, Whitney AM, Ray ML, MacGregor JP, Steigerwalt A, Daneshvar MI, Weyant R, Wray B, Steele J, Strober W, Gill VJ.	J Clin Microbiol	10.1128/jcm.37.8.2439-2445.1999	1999
Phylogeny	"Flexispira rappini" bacteremia in a child with pneumonia.	Tee W, Leder K, Karroum E, Dyall-Smith M.	J Clin Microbiol	10.1128/jcm.36.6.1679-1682.1998	1998
Enzymology	Catalase, a specific antigen in the feces of human subjects infected with Helicobacter pylori.	Suzuki N, Wakasugi M, Nakaya S, Kokubo N, Sato M, Kajiyama H, Takahashi R, Hirata H, Ezure Y, Fukuda Y, Shimoyama T.	Clin Diagn Lab Immunol	10.1128/cdli.9.4.784-788.2002	2002
Phylogeny	Detection of Helicobacter pylori in gastric mucosa of patients with gastroduodenal diseases by PCR-restriction analysis using the RNA polymerase gene (rpoB).	Lim CY, Lee KH, Cho MJ, Chang MW, Kim SY, Myong NH, Lee WK, Rhee KH, Kook YH.	J Clin Microbiol	10.1128/jcm.41.7.3387-3391.2003	2003
Enzymology	Specific detection and prevalence of Helicobacter heilmannii-like organisms in the human gastric mucosa by fluorescent in situ hybridization and partial 16S ribosomal DNA sequencing.	Trebesius K, Adler K, Vieth M, Stolte M, Haas R.	J Clin Microbiol	10.1128/jcm.39.4.1510-1516.2001	2001
Enzymology	Presence of active aliphatic amidases in Helicobacter species able to colonize the stomach.	Bury-Mone S, Skouloubris S, Dauga C, Thiberge JM, Dailidiene D, Berg DE, Labigne A, De Reuse H.	Infect Immun	10.1128/iai.71.10.5613-5622.2003	2003
Enzymology	Direct polymerase chain reaction detection of Campylobacter jejuni and Campylobacter coli in raw milk and dairy products.	Wegmuller B, Luthy J, Candrian U.	Appl Environ Microbiol	10.1128/aem.59.7.2161-2165.1993	1993
	Oligodeoxynucleotide probes for Campylobacter fetus and Campylobacter hyointestinalis based on 16S rRNA sequences.	Wesley IV, Wesley RD, Cardella M, Dewhirst FE, Paster BJ.	J Clin Microbiol	10.1128/jcm.29.9.1812-1817.1991	1991
	Arcobacter-specific and Arcobacter butzleri-specific 16S rRNA-based DNA probes.	Wesley IV, Schroeder-Tucker L, Baetz AL, Dewhirst FE, Paster BJ.	J Clin Microbiol	10.1128/jcm.33.7.1691-1698.1995	1995
	Multidrug Efflux Systems in Helicobacter cinaedi.	Morita Y, Tomida J, Kawamura Y.	Antibiotics (Basel)	10.3390/antibiotics1010029	2012
Enzymology	Rapid identification and subtyping of Helicobacter cinaedi strains by intact-cell mass spectrometry profiling with the use of matrix-assisted laser desorption ionization-time of flight mass spectrometry.	Taniguchi T, Sekiya A, Higa M, Saeki Y, Umeki K, Okayama A, Hayashi T, Misawa N.	J Clin Microbiol	10.1128/jcm.01798-13	2014
	A Case of Helicobacter cinaedi Bacteraemia in a Previously Healthy Person with Cellulitis.	Holst H, Andresen K, Blom J, Hojlyng N, Kemp M, Krogfelt KA, Christensen JJ.	Open Microbiol J	10.2174/1874285800802010029	2008
	Redundancy and Specificity of Type VI Secretion vgrG Loci in Antibacterial Activity of Agrobacterium tumefaciens 1D1609 Strain.	Santos MNM, Cho ST, Wu CF, Chang CJ, Kuo CH, Lai EM.	Front Microbiol	10.3389/fmicb.2019.03004	2019
	Revealing the Host-Dependent Nature of an Engineered Genetic Inverter in Concordance with Physiology.	Chan DTC, Baldwin GS, Bernstein HC.	Biodes Res	10.34133/bdr.0016	2023
	Epithelial Coculture and l-Lactate Promote Growth of Helicobacter cinaedi under H2-Free Aerobic Conditions.	Schmitz JE, Taniguchi T, Misawa N, Cover TL.	Appl Environ Microbiol	10.1128/aem.01943-16	2016
	Persistent Helicobacter pullorum colonization in C57BL/6NTac mice: a new mouse model for an emerging zoonosis.	Turk ML, Cacioppo LD, Ge Z, Shen Z, Whary MT, Parry N, Boutin SR, Klein HJ, Fox JG.	J Med Microbiol	10.1099/jmm.0.040055-0	2012
	Cytolethal distending toxin promotes Helicobacter cinaedi-associated typhlocolitis in interleukin-10-deficient mice.	Shen Z, Feng Y, Rogers AB, Rickman B, Whary MT, Xu S, Clapp KM, Boutin SR, Fox JG.	Infect Immun	10.1128/iai.00166-09	2009
Phylogeny	Diagnosis of Genus Helicobacter through a hemi-nested PCR assay of 16S rRNA.	Qin H, Tang G, Yi P, Pan X, Huang H, Chang R, Shi Z, Ashraf MA.	Saudi Pharm J	10.1016/j.jsps.2016.04.015	2016
Phylogeny	Misidentifying helicobacters: the Helicobacter cinaedi example.	Vandamme P, Harrington CS, Jalava K, On SL.	J Clin Microbiol	10.1128/jcm.38.6.2261-2266.2000	2000
	A genomic island defines subspecies-specific virulence features of the host-adapted pathogen Campylobacter fetus subsp. venerealis.	Gorkiewicz G, Kienesberger S, Schober C, Scheicher SR, Gully C, Zechner R, Zechner EL.	J Bacteriol	10.1128/jb.00803-09	2010
Phylogeny	Detection of Campylobacter in stool and determination of significance by culture, enzyme immunoassay, and PCR in developing countries.	Platts-Mills JA, Liu J, Gratz J, Mduma E, Amour C, Swai N, Taniuchi M, Begum S, Penataro Yori P, Tilley DH, Lee G, Shen Z, Whary MT, Fox JG, McGrath M, Kosek M, Haque R, Houpt ER.	J Clin Microbiol	10.1128/jcm.02935-13	2014
	The effect of Helicobacter pylori infection and different H. pylori components on the proliferation and apoptosis of gastric epithelial cells and fibroblasts.	Gonciarz W, Krupa A, Hinc K, Obuchowski M, Moran AP, Gajewski A, Chmiela M.	PLoS One	10.1371/journal.pone.0220636	2019
Pathogenicity	Simultaneous identification of campylobacters and prediction of quinolone resistance by comparative sequence analysis.	Husmann M, Feddersen A, Steitz A, Freytag C, Bhakdi S.	J Clin Microbiol	10.1128/jcm.35.9.2398-2400.1997	1997
Enzymology	Xer recombinase and genome integrity in Helicobacter pylori, a pathogen without topoisomerase IV.	Debowski AW, Carnoy C, Verbrugghe P, Nilsson HO, Gauntlett JC, Fulurija A, Camilleri T, Berg DE, Marshall BJ, Benghezal M.	PLoS One	10.1371/journal.pone.0033310	2012
Enzymology	Enterohepatic helicobacter in ulcerative colitis: potential pathogenic entities?	Thomson JM, Hansen R, Berry SH, Hope ME, Murray GI, Mukhopadhya I, McLean MH, Shen Z, Fox JG, El-Omar E, Hold GL.	PLoS One	10.1371/journal.pone.0017184	2011
Enzymology	Characterization and presumptive identification of Helicobacter pylori isolates from rhesus monkeys.	Drazek ES, Dubois A, Holmes RK.	J Clin Microbiol	10.1128/jcm.32.7.1799-1804.1994	1994
Phylogeny	Systematic analysis of compositional order of proteins reveals new characteristics of biological functions and a universal correlate of macroevolution.	Persi E, Horn D.	PLoS Comput Biol	10.1371/journal.pcbi.1003346	2013
Phylogeny	Captive rhesus monkeys (Macaca mulatta) are commonly infected with Helicobacter cinaedi.	Fernandez KR, Hansen LM, Vandamme P, Beaman BL, Solnick JV.	J Clin Microbiol	10.1128/jcm.40.6.1908-1912.2002	2002
Phylogeny	Genotypic identification of erythromycin-resistant campylobacter isolates as helicobacter species and analysis of resistance mechanism.	Kuijper EJ, Stevens S, Imamura T, De Wever B, Claas EC.	J Clin Microbiol	10.1128/jcm.41.8.3732-3736.2003	2003
Enzymology	Diagnosis of Helicobacter pylori infection by PCR: comparison with other invasive techniques and detection of cagA gene in gastric biopsy specimens.	Lage AP, Godfroid E, Fauconnier A, Burette A, Butzler JP, Bollen A, Glupczynski Y.	J Clin Microbiol	10.1128/jcm.33.10.2752-2756.1995	1995
Biotechnology	A real-time PCR assay for the detection of Campylobacter jejuni in foods after enrichment culture.	Sails AD, Fox AJ, Bolton FJ, Wareing DR, Greenway DL.	Appl Environ Microbiol	10.1128/aem.69.3.1383-1390.2003	2003
	Helicobacter pylori mutants defective in RuvC Holliday junction resolvase display reduced macrophage survival and spontaneous clearance from the murine gastric mucosa.	Loughlin MF, Barnard FM, Jenkins D, Sharples GJ, Jenks PJ.	Infect Immun	10.1128/iai.71.4.2022-2031.2003	2003
Pathogenicity	Mutations in Genes Encoding Penicillin-Binding Proteins and Efflux Pumps Play a Role in beta-Lactam Resistance in Helicobacter cinaedi.	Rimbara E, Mori S, Kim H, Suzuki M, Shibayama K	Antimicrob Agents Chemother	10.1128/AAC.02036-17	2018
	Helicobacter cinaedi induced typhlocolitis in Rag-2-deficient mice.	Shen Z, Feng Y, Rickman B, Fox JG	Helicobacter	10.1111/hel.12179	2014
Phylogeny	A case of Helicobacter cinaedi bacteremia in an asplenic patient.	Kim SK, Cho EJ, Sung H, An D, Park SJ, Kim MN, Nam GB	Ann Lab Med	10.3343/alm.2012.32.6.433	2012
Enzymology	Molecular epidemiologic analysis and antimicrobial resistance of Helicobacter cinaedi isolated from seven hospitals in Japan.	Rimbara E, Mori S, Matsui M, Suzuki S, Wachino J, Kawamura Y, Shen Z, Fox JG, Shibayama K	J Clin Microbiol	10.1128/JCM.06810-11	2012
Enzymology	Campylobacter cinaedi is normal intestinal flora in hamsters.	Gebhart CJ, Fennell CL, Murtaugh MP, Stamm WE	J Clin Microbiol	10.1128/jcm.27.7.1692-1694.1989	1989
Enzymology	Helicobacter westmeadii sp. nov., a new species isolated from blood cultures of two AIDS patients.	Trivett-Moore NL, Rawlinson WD, Yuen M, Gilbert GL.	J Clin Microbiol	10.1128/jcm.35.5.1144-1150.1997	1997
Phylogeny	Helicobacter mesocricetorum sp. nov., A novel Helicobacter isolated from the feces of Syrian hamsters.	Simmons JH, Riley LK, Besch-Williford CL, Franklin CL.	J Clin Microbiol	10.1128/jcm.38.5.1811-1817.2000	2000
Phylogeny	Pseudomonas abyssi sp. nov., isolated from the abyssopelagic water of the Mariana Trench.	Wei Y, Mao H, Xu Y, Zou W, Fang J, Blom J.	Int J Syst Evol Microbiol	10.1099/ijsem.0.002785	2018
Phylogeny	Proposal of Helicobacter canicola sp. nov., previously identified as Helicobacter cinaedi, isolated from canines.	Kawamura Y, Tomida J, Miyoshi-Akiyama T, Okamoto T, Narita M, Hashimoto K, Cnockaert M, Vandamme P, Morita Y, Sawa T, Akaike T	Syst Appl Microbiol	10.1016/j.syapm.2016.06.004	2016

References

#2001	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5359
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38146	; Curators of the CIP;
#46903	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 18818
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68373	Automatically annotated from API CAM .
#118282	Collection of Institut Pasteur ; Curators of the CIP; CIP 103752
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Helicobacter cinaedi (DSM 5359, ATCC 35683, CCUG 18818)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

API CAM

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000349975

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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