Halomonas gudaonensis (DSM 23417, CGMCC 1.6133, LMG 23610)

Name: Halomonas gudaonensis (DSM 23417, CGMCC 1.6133, LMG 23610)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6054

Type strain

Strain Designation SL014B-69

Culture col. no. DSM 23417 CGMCC 1.6133 LMG 23610 SL014B-69

NCBI tax ID(s) 376427

Special Collections DSMZ Literature strains

History <- LMG <- CGMCC <- X.-L. Wu, Tsinghua University, Beijing <- Y. Wang <- H. Cai

Links

Halomonas gudaonensis SL014B-69 is an aerobe, Gram-negative, motile bacterium that was isolated from oil polluted soil.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 290950

LMG 23610,CGMCC 1.6133,DSM 23417

@ref 20215

Last LPSN update 2026-02-09 11:19:07

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Halomonas

Species Halomonas gudaonensis

Full scientific name Halomonas gudaonensis Wang et al. 2007

Synonyms (1)

Billgrantia gudaonensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32023	negative	1.2 µm	0.35 µm	rod-shaped
125438	negative				99.4
125439	negative				98.1
125439					92.2

Pigmentation

32023

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17194	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17194	positive	growth	28
32023	positive	growth	10-42
32023	positive	optimum	30

Culture pH

@ref	Ability	Type	PH	PH range
32023	positive	optimum	8
32023	positive	growth	8.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

32023

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
32023
125438		90.118
125439		99.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32023	NaCl	positive	growth	01-20 %
32023	NaCl	positive	optimum	12.5 %

Observation

32023

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32023	30089 ChEBI	acetate	+	carbon source
32023	16449 ChEBI	alanine	+	carbon source
32023	29016 ChEBI	arginine	+	carbon source
32023	23652 ChEBI	dextrin	+	carbon source
32023	16236 ChEBI	ethanol	+	carbon source
32023	28260 ChEBI	galactose	+	carbon source
32023	24265 ChEBI	gluconate	+	carbon source
32023	17234 ChEBI	glucose	+	carbon source
32023	17754 ChEBI	glycerol	+	carbon source
32023	24996 ChEBI	lactate	+	carbon source
32023	17716 ChEBI	lactose	+	carbon source
32023	17306 ChEBI	maltose	+	carbon source
32023	29864 ChEBI	mannitol	+	carbon source
32023	37684 ChEBI	mannose	+	carbon source
32023	17632 ChEBI	nitrate	+	reduction
32023	26271 ChEBI	proline	+	carbon source
32023	17992 ChEBI	sucrose	+	carbon source
32023	27082 ChEBI	trehalose	+	carbon source
32023	16199 ChEBI	urea	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32023	catalase	+	1.11.1.6
32023	cytochrome oxidase	+	1.9.3.1
32023	urease	+	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	L-lactaldehyde degradation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	methylglyoxal degradation	100	5 of 5
66794	ethanol fermentation	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	resorcinol degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	butanoate fermentation	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	ubiquinone biosynthesis	100	7 of 7
66794	Entner Doudoroff pathway	100	10 of 10
66794	suberin monomers biosynthesis	100	2 of 2
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	vitamin B1 metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	proline metabolism	90.91	10 of 11
66794	palmitate biosynthesis	90.91	20 of 22
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	degradation of sugar acids	88	22 of 25
66794	isoleucine metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	alanine metabolism	86.21	25 of 29
66794	heme metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	phenylalanine metabolism	84.62	11 of 13
66794	vitamin B6 metabolism	81.82	9 of 11
66794	3-chlorocatechol degradation	80	4 of 5
66794	pyrimidine metabolism	80	36 of 45
66794	factor 420 biosynthesis	80	4 of 5
66794	citric acid cycle	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	purine metabolism	76.6	72 of 94
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	degradation of sugar alcohols	75	12 of 16
66794	acetate fermentation	75	3 of 4
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	NAD metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propionate fermentation	70	7 of 10
66794	methane metabolism	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	chorismate metabolism	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	oxidative phosphorylation	65.93	60 of 91
66794	methionine metabolism	65.38	17 of 26
66794	glycolysis	64.71	11 of 17
66794	lipid metabolism	64.52	20 of 31
66794	glutathione metabolism	64.29	9 of 14
66794	pentose phosphate pathway	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	urea cycle	61.54	8 of 13
66794	sulfate reduction	61.54	8 of 13
66794	cysteine metabolism	61.11	11 of 18
66794	tryptophan metabolism	60.53	23 of 38
66794	non-pathway related	60.53	23 of 38
66794	glycogen metabolism	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	3-phenylpropionate degradation	60	9 of 15
66794	lysine metabolism	59.52	25 of 42
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	degradation of hexoses	55.56	10 of 18
66794	nitrate assimilation	55.56	5 of 9
66794	histidine metabolism	55.17	16 of 29
66794	phenol degradation	55	11 of 20
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	degradation of pentoses	53.57	15 of 28
66794	kanosamine biosynthesis II	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	cyclohexanol degradation	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	tyrosine metabolism	50	7 of 14
66794	quinate degradation	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	glycine metabolism	50	5 of 10
66794	glycogen biosynthesis	50	2 of 4
66794	coenzyme M biosynthesis	50	5 of 10
66794	phenylmercury acetate degradation	50	1 of 2
66794	polyamine pathway	47.83	11 of 23
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	vitamin B12 metabolism	41.18	14 of 34
66794	ascorbate metabolism	40.91	9 of 22
66794	vitamin K metabolism	40	2 of 5
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	carnitine metabolism	37.5	3 of 8
66794	d-xylose degradation	36.36	4 of 11
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	arachidonic acid metabolism	33.33	6 of 18
66794	sulfoquinovose degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	starch degradation	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	metabolism of disaccharids	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	toluene degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	carotenoid biosynthesis	22.73	5 of 22

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17194	oil polluted soil	Shandong province, Gudao	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ421808 (>99% sequence identity) for Halomonas gudaonensis from Microbeatlas

Aquatic Samples	5
Soil Samples	3
Animal Samples
Plant Samples
Total Samples	8

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17194	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2617270877 annotated assembly for Billgrantia gudaonensis CGMCC 1.6133	scaffold	GCA_900100195	376427.9	2617270877	376427	69.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17194	Halomonas gudaonensis strain SL014B-69 16S ribosomal RNA gene, complete sequence	DQ421808	1462		376427

GC content

@ref	GC-content (mol%)
17194	64.0
32023	64

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halomonas gudaonensis CGMCC 1.6133
NCBI: GCA_900100195

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	yes	92.20	no
125439	gram_stain	BacteriaNetⓘ	negative	98.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	85.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halomonas gudaonensis CGMCC 1.6133
NCBI: GCA_900100195.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.40	yes
125438	anaerobic	anaerobicⓘ	no	96.99	yes
125438	aerobic	aerobicⓘ	yes	77.11	no
125438	spore-forming	spore-formingⓘ	no	90.12	no
125438	thermophilic	thermophileⓘ	no	98.46	yes
125438	flagellated	motile2+ⓘ	yes	82.33	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Validation List no. 216. Valid publication of new names and new combinations effectively published outside the IJSEM.	Oren A, Goker M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006229	2024
	Whole-Genome Shotgun Sequence of Halomonas sp. Strain SBS 10, Isolated from a Hypersaline Lake in India.	Kushwaha B, Sharma GP, Sharma A, Shankar P, Geethadevi A, Sharma N, Sharma MK, Jadhav I, Parashar D, Jadhav K.	Microbiol Resour Announc	10.1128/mra.01270-19	2020
	Halocin H4 is activated through cleavage by halolysin HlyR4.	Chen S, Dai Y, Ke J, Luo Y, Wang C, Hao Y, Zhang A, Han J, Xiang H.	Appl Environ Microbiol	10.1128/aem.02284-23	2024
Phylogeny	Betaine accumulation suppresses the de-novo synthesis of ectoine at a low osmotic concentration in Halomonas sp SBS 10, a bacterium with broad salinity tolerance.	Kushwaha B, Jadhav I, Verma HN, Geethadevi A, Parashar D, Jadhav K	Mol Biol Rep	10.1007/s11033-019-04924-2	2019
Phylogeny	Halomonas azerbaijanica sp. nov., a halophilic bacterium isolated from Urmia Lake after the 2015 drought.	Kazemi E, Tarhriz V, Amoozegar MA, Hejazi MS	Int J Syst Evol Microbiol	10.1099/ijsem.0.004578	2020
Phylogeny	Halomonas sambharensis sp. nov., a Moderately Halophilic Bacterium Isolated from the Saltern Crystallizer Ponds of the Sambhar Salt Lake in India.	Kushwaha B, Jadhav I, Jadhav K	Curr Microbiol	10.1007/s00284-020-01892-w	2020
Phylogeny	Halomonas daqingensis sp. nov., a moderately halophilic bacterium isolated from an oilfield soil.	Wu G, Wu XQ, Wang YN, Chi CQ, Tang YQ, Kida K, Wu XL, Luan ZK	Int J Syst Evol Microbiol	10.1099/ijs.0.65746-0	2008
Phylogeny	Halomonas gudaonensis sp. nov., isolated from a saline soil contaminated by crude oil.	Wang YN, Cai H, Yu SL, Wang ZY, Liu J, Wu XL	Int J Syst Evol Microbiol	10.1099/ijs.0.64826-0	2007
Phylogeny	Halomonas faecis sp. nov., a halophilic bacterium isolated from human faeces.	Liu ZX, Chen JH, Yang LL, Feng YZ, Deng LY, He JW, Tang SK, Chen YG	Extremophiles	10.1007/s00792-022-01269-w	2022

References

#17194	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23417
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28275	IJSEM 911 2007 ( DOI 10.1099/ijs.0.64826-0 , PubMed 17473232 )
#32023	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28275
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halomonas gudaonensis (DSM 23417, CGMCC 1.6133, LMG 23610)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900100195

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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