Name: Halomonas janggokensis M24
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6050

Type strain:

Species: Halomonas janggokensis

Strain Designation: M24

Culture col. no.: DSM 18043, CIP 109896, KCTC 12663

Strain history: CIP <- 2008, DSMZ <- K.K. Kim, KAIST, Daejeon, Korea: strain M24

NCBI tax ID(s): 370767 (species)

SI-ID 302757

KCTC 12663, DSM 18043, CIP 109896

Section

Halomonas janggokensis M24 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from solar saltern.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas janggokensis**
	Full Scientific Name (LPSN)	Halomonas janggokensis Kim et al. 2007

Synonym

"Vreelandella janggokensis"

Information on morphological and physiological properties Morphology

[Ref.: #31987]	Gram stain	negative
[Ref.: #120309]	Gram stain	negative

[Ref.: #31987]	Cell length	1.6-2 µm

[Ref.: #31987]	Cell width	0.5-0.7 µm

[Ref.: #31987]	Cell shape	rod-shaped
[Ref.: #120309]	Cell shape	rod-shaped

[Ref.: #31987]	Motility	yes
[Ref.: #120309]	Motility	yes

[Ref.: #31987]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7264]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7264]

Culture medium growth

[Ref.: #7264]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7264]

Culture medium composition

expand / minimize

[Ref.: #39995]

Culture medium

MEDIUM 204 - for Halorubrum, Marinococcus and Natrialba

[Ref.: #39995]

Culture medium growth

[Ref.: #39995]

Culture medium composition

expand / minimize

[Ref.: #120309]

Culture medium

CIP Medium 204

[Ref.: #120309]

Culture medium growth

[Ref.: #120309]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7264]	growth	28 °C
[Ref.: #31987]	growth	05-45 °C
[Ref.: #31987]	optimum	25-30 °C
[Ref.: #39995]	growth	25 °C

[Ref.: #7264]	Temperature range	mesophilic
[Ref.: #31987]	Temperature range	mesophilic
[Ref.: #39995]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31987]			optimum	07-08
[Ref.: #31987]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31987]

Oxygen tolerance

aerobe

[Ref.: #31987]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31987]		NaCl		growth	01-20	%
[Ref.: #31987]		NaCl		optimum	10-15	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31987]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #31987]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #31987]	acetate ChEBI	+	carbon source
[Ref.: #31987]	alanine ChEBI	+	carbon source
[Ref.: #31987]	arabinose ChEBI	+	carbon source
[Ref.: #31987]	citrate ChEBI	+	carbon source
[Ref.: #31987]	glucose ChEBI	+	carbon source
[Ref.: #31987]	lactate ChEBI	+	carbon source
[Ref.: #31987]	malate ChEBI	+	carbon source
[Ref.: #31987]	malonate ChEBI	+	carbon source
[Ref.: #31987]	mannitol ChEBI	+	carbon source
[Ref.: #120309]	nitrate ChEBI	-	reduction
[Ref.: #120309]	nitrite ChEBI	-	reduction
[Ref.: #31987]	proline ChEBI	+	carbon source
[Ref.: #31987]	propionate ChEBI	+	carbon source
[Ref.: #31987]	sorbitol ChEBI	+	carbon source
[Ref.: #31987]	sucrose ChEBI	+	carbon source
[Ref.: #31987]	valerate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #120309]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31987]	catalase	+	1.11.1.6
[Ref.: #120309]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #120309]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120309]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120309]	12201	-	+	-	-	-	+	+	+	-	-	-	-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7264]	Sample type/isolated from	solar saltern
[Ref.: #7264]	Geographic location (country and/or sea, region)	Anmyeondo
[Ref.: #7264]	Country	Republic of Korea
[Ref.: #7264]	Country ISO 3 Code	KOR
[Ref.: #7264]	Continent	Asia

[Ref.: #120309]	Sample type/isolated from	Environment, Solar saltern
[Ref.: #120309]	Geographic location (country and/or sea, region)	Chungcheong, Anmyeondo
[Ref.: #120309]	Country	Republic of Korea
[Ref.: #120309]	Country ISO 3 Code	KOR
[Ref.: #120309]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Condition

#Saline

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7264]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120309]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31987]	Halomonas janggokensis partial 16S rRNA gene, type strain M24T	AM229315	1478	GenBank	370767 tax ID

[Ref.: #31987]

GC-content

60.2-61 mol%

Availability in culture collections External links

[Ref.: #7264]

Culture collection no.

DSM 18043, CIP 109896, KCTC 12663

[Ref.: #75537]

SI-ID 302757

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas gomseomensis sp. nov., Halomonas janggokensis sp. nov., Halomonas salaria sp. nov. and Halomonas denitrificans sp. nov., moderately halophilic bacteria isolated from saline water.	Kim KK, Jin L, Yang HC, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64767-0	2007	*

References

#7264

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18043

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31987

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28241 (see below)

#39995 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#75537

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID302757.1 )

#120309 Collection of Institut Pasteur ; Curators of the CIP; CIP 109896

#28241

IJSEM 675 2007 ( DOI 10.1099/ijs.0.64767-0 , PubMed 17392185 )

* These data were automatically processed and therefore are not curated

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