Name: Halomonas koreensis SS20
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6047

Type strain:

Species: Halomonas koreensis

Strain Designation: SS20

Culture col. no.: DSM 23530, JCM 12237, KCTC 12127, CIP 108635

Strain history: CIP <- 2005, JCM <- C. J. Kim: strain SS20 <- J. M. Lim

NCBI tax ID(s): 245385 (species)

SI-ID 134428

JCM 12237, KCTC 12127, CIP 108635, DSM 23530

Special Collections

Section

Halomonas koreensis SS20 is an aerobe, Gram-negative, motile bacterium that was isolated from solar saltern.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas koreensis**
	Full Scientific Name (LPSN)	Halomonas koreensis Lim et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #31278]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #120477]	Gram stain	negative

[Ref.: #31278]	Cell length	2 µm

[Ref.: #31278]	Cell width	0.9 µm

[Ref.: #31278]	Cell shape	rod-shaped
[Ref.: #120477]	Cell shape	rod-shaped

[Ref.: #31278]	Motility	yes
[Ref.: #120477]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17261]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17261]

Culture medium growth

[Ref.: #17261]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17261]

Culture medium composition

expand / minimize

[Ref.: #38285]

Culture medium

Marine agar (MA)

[Ref.: #38285]

Culture medium growth

[Ref.: #38285]

Culture medium composition

expand / minimize

[Ref.: #120477]

Culture medium

CIP Medium 13

[Ref.: #120477]

Culture medium growth

[Ref.: #120477]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #17261]		growth	37 °C
[Ref.: #31278]		growth	10-47 °C
[Ref.: #31278]		optimum	35 °C
[Ref.: #38285]		growth	37 °C
[Ref.: #67770]		growth	35 °C
[Ref.: #67771]		growth	35 °C
[Ref.: #120477]		growth	15-41 °C
[Ref.: #120477]	no	growth	5 °C
[Ref.: #120477]	no	growth	45 °C

	pH	Kind of pH		pH
[Ref.: #31278]			optimum	7.5
[Ref.: #31278]			growth	5.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31278]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #120477]	Oxygen tolerance	obligate aerobe

[Ref.: #31278]

Ability of spore formation

	Salt	Tested relation		Salt conc.
[Ref.: #31278]	NaCl		growth	01-20	%
[Ref.: #31278]	NaCl		optimum	6.5	%
[Ref.: #120477]	NaCl		growth	4-10	%
[Ref.: #120477]	NaCl	no	growth	0	%
[Ref.: #120477]	NaCl	no	growth	2	%

[Ref.: #67770]	Observation	quinones: Q-9
[Ref.: #67771]	Observation	quinones: Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120477]	citrate ChEBI	-	carbon source
[Ref.: #120477]	esculin ChEBI	-	hydrolysis
[Ref.: #31278]	glucose ChEBI	+	carbon source
[Ref.: #31278]	glycerol ChEBI	+	carbon source
[Ref.: #120477]	hippurate ChEBI	-	hydrolysis
[Ref.: #120477]	malonate ChEBI	-	assimilation
[Ref.: #31278]	nitrate ChEBI	+	reduction
[Ref.: #120477]	nitrate ChEBI	+	reduction
[Ref.: #120477]	nitrate ChEBI	-	respiration
[Ref.: #120477]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120477]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120477]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120477]	amylase	-
[Ref.: #120477]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120477]	caseinase	-	3.4.21.50
[Ref.: #31278]	catalase	+	1.11.1.6
[Ref.: #120477]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31278]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120477]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #120477]	gelatinase	-
[Ref.: #120477]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120477]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120477]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120477]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120477]	oxidase	+
[Ref.: #120477]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120477]	tryptophan deaminase	-
[Ref.: #120477]	tween esterase	-
[Ref.: #120477]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120477]	2846	not determinedn.d.	+	-	-	+	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	+	-	+	+	-	+	+	-	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120477]	11347	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17261]	Sample type/isolated from	solar saltern
[Ref.: #17261]	Geographic location (country and/or sea, region)	Sungumi
[Ref.: #17261]	Country	Republic of Korea
[Ref.: #17261]	Country ISO 3 Code	KOR
[Ref.: #17261]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Solar saltern
[Ref.: #67770]	Geographic location (country and/or sea, region)	Sungumi
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From a salt field
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #120477]	Sample type/isolated from	Environment, Solar saltern
[Ref.: #120477]	Geographic location (country and/or sea, region)	Sungumi
[Ref.: #120477]	Country	Republic of Korea
[Ref.: #120477]	Country ISO 3 Code	KOR
[Ref.: #120477]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Condition

#Saline

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY382579 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	19
Soil Samples	3
Animal Samples	32
Plant Samples
Total Samples	54

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17261]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120477]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17261]	Halomonas koreensis strain SS20 16S ribosomal RNA gene, partial sequence	AY382579	1399	GenBank ENA	245385 tax ID
[Ref.: #20218]	Halomonas koreensis genes for 16S ribosomal RNA, internal transcribed spacer 1 and 23S ribosomal RNA, partial and complete sequence, clone: 1211	AB367233	1211	GenBank ENA	245385 tax ID	*

[Ref.: #17261]	GC-content	70 mol%
[Ref.: #67770]	GC-content	70 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	70.0 mol%

Availability in culture collections External links

[Ref.: #17261]

Culture collection no.

DSM 23530, JCM 12237, KCTC 12127, CIP 108635

[Ref.: #75534]

SI-ID 134428

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas smyrnensis sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium.	Poli A, Nicolaus B, Denizci AA, Yavuzturk B, Kazan D	Int J Syst Evol Microbiol	10.1099/ijs.0.037036-0	2012	*
Phylogeny	Halomonas stenophila sp. nov., a halophilic bacterium that produces sulphate exopolysaccharides with biological activity.	Llamas I, Bejar V, Martinez-Checa F, Martinez-Canovas MJ, Molina I, Quesada E	Int J Syst Evol Microbiol	10.1099/ijs.0.026369-0	2010	*
Phylogeny	Halomonas koreensis sp. nov., a novel moderately halophilic bacterium isolated from a solar saltern in Korea.	Lim JM, Yoon JH, Lee JC, Jeon CO, Park DJ, Sung C, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.63194-0	2004	*

References

#17261

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23530

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31278

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27598 (see below)

#38285 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75534

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134428.1 )

#120477 Collection of Institut Pasteur ; Curators of the CIP; CIP 108635

#27598

IJSEM 2037 2004 ( DOI 10.1099/ijs.0.63194-0 , PubMed 15545430 )

* These data were automatically processed and therefore are not curated

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