Name: Halomonas ventosae Al12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6042

Type strain:

Species: Halomonas ventosae

Strain Designation: Al12

Culture col. no.: DSM 15911, CECT 5797, CIP 108433

Strain history: CIP <- 2004, CECT <- M. Martinez-Canovas, Spain: strain Al12

NCBI tax ID(s): 229007 (species)

SI-ID 354034

CECT 5797, DSM 15911, CIP 108433, LMG 26187

Section

Halomonas ventosae Al12 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil with high salt content.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas ventosae**
	Full Scientific Name (LPSN)	Halomonas ventosae Martínez-Cánovas et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #30101]	Gram stain	negative
[Ref.: #123814]	Gram stain	negative

[Ref.: #30101]	Cell length	1.3 µm

[Ref.: #30101]	Cell width	0.75 µm

[Ref.: #30101]	Cell shape	rod-shaped
[Ref.: #123814]	Cell shape	rod-shaped

[Ref.: #30101]	Motility	yes
[Ref.: #123814]	Motility	yes

[Ref.: #30101]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6179]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6179]

Culture medium growth

[Ref.: #6179]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6179]

Culture medium composition

expand / minimize

[Ref.: #36733]

Culture medium

MEDIUM 110 - for Halomonas meridiana

[Ref.: #36733]

Culture medium growth

[Ref.: #36733]

Culture medium composition

expand / minimize

[Ref.: #123814]

Culture medium

CIP Medium 110

[Ref.: #123814]

Culture medium growth

[Ref.: #123814]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6179]		growth	28 °C
[Ref.: #30101]		growth	15-50 °C
[Ref.: #30101]		optimum	32.5 °C
[Ref.: #36733]		growth	25 °C
[Ref.: #123814]		growth	25-37 °C
[Ref.: #123814]	no	growth	5 °C
[Ref.: #123814]	no	growth	15 °C
[Ref.: #123814]	no	growth	41 °C
[Ref.: #123814]	no	growth	45 °C

[Ref.: #6179]	Temperature range	mesophilic
[Ref.: #30101]	Temperature range	mesophilic
[Ref.: #36733]	Temperature range	mesophilic
[Ref.: #123814]	Temperature range	mesophilic
[Ref.: #123814]	Temperature range	psychrophilic
[Ref.: #123814]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #30101]			optimum	8
[Ref.: #30101]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30101]

Oxygen tolerance

aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #30101]	NaCl		growth	01-15	%
[Ref.: #30101]	NaCl		optimum	8	%
[Ref.: #123814]	NaCl		growth	2-10	%
[Ref.: #123814]	NaCl	no	growth	0	%

[Ref.: #30101]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30101]	acetate ChEBI	+	carbon source
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30101]	citrate ChEBI	+	carbon source
[Ref.: #123814]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123814]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30101]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30101]	galactose ChEBI	+	carbon source
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30101]	gluconate ChEBI	+	carbon source
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30101]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #123814]	hippurate ChEBI	+	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30101]	lactate ChEBI	+	carbon source
[Ref.: #30101]	lactose ChEBI	+	carbon source
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30101]	malonate ChEBI	+	carbon source
[Ref.: #123814]	malonate ChEBI	-	assimilation
[Ref.: #30101]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30101]	mannitol ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30101]	nitrate ChEBI	+	reduction
[Ref.: #123814]	nitrate ChEBI	+	reduction
[Ref.: #123814]	nitrite ChEBI	-	reduction
[Ref.: #30101]	phenylalanine ChEBI	+	carbon source
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30101]	propionate ChEBI	+	carbon source
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30101]	ribitol ChEBI	+	carbon source
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30101]	sorbitol ChEBI	+	carbon source
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30101]	succinate ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30101]	trehalose ChEBI	+	carbon source
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #30101]	tween 20 ChEBI	+	carbon source
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #30101]		hydrogen sulfide ChEBI	yes
[Ref.: #123814]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #123814]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123814]	amylase	-
[Ref.: #123814]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123814]	caseinase	-	3.4.21.50
[Ref.: #30101]	catalase	+	1.11.1.6
[Ref.: #123814]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #30101]	cytochrome oxidase	+	1.9.3.1
[Ref.: #123814]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #123814]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #123814]	gelatinase	-
[Ref.: #123814]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123814]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123814]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123814]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123814]	oxidase	+
[Ref.: #123814]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #123814]	protease	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123814]	tryptophan deaminase	-
[Ref.: #123814]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #123814]	11301	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123814]	11184	-	+	+	-	-	+	-	-	+	-	-	+	-	+	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6179]	Sample type/isolated from	soil with high salt content
[Ref.: #6179]	Geographic location (country and/or sea, region)	Jaen
[Ref.: #6179]	Country	Spain
[Ref.: #6179]	Country ISO 3 Code	ESP
[Ref.: #6179]	Continent	Europe

[Ref.: #123814]	Sample type/isolated from	Environment, Soil with high salt content
[Ref.: #123814]	Country	Spain
[Ref.: #123814]	Country ISO 3 Code	ESP
[Ref.: #123814]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY268080 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	1169
Soil Samples	202
Animal Samples	721
Plant Samples	115
Total Samples	2207

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6179]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123814]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6179]	Halomonas ventosae 16S ribosomal RNA gene, partial sequence	AY268080	1395	ENA	229007 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas ventosae CECT 5797	GCA_004363555	scaffold	GenBank	229007 tax ID	*
[Ref.: #66792]	Halomonas ventosae strain CECT 5797	229007.12	wgs	PATRIC	229007 tax ID	*
[Ref.: #66792]	Halomonas ventosae CECT 5797	2770939578	draft	JGI IMG/M	229007 tax ID	*

[Ref.: #6179]	GC-content	72.6 mol%
[Ref.: #30101]	GC-content	74.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas ventosae CECT 5797 NCBI: GCA_004363555.1
[Ref.: #69480]	motile	yes	88.837	yes
[Ref.: #69480]	flagellated	yes	61.598	no
[Ref.: #69480]	gram-positive	no	98.422	yes
[Ref.: #69480]	anaerobic	no	98.622	yes
[Ref.: #69480]	aerobic	yes	88.258	yes
[Ref.: #69480]	halophile	yes	93.258	yes
[Ref.: #69480]	spore-forming	no	96.338	no
[Ref.: #69480]	glucose-util	yes	92.012	yes
[Ref.: #69480]	thermophile	no	97.937	yes
[Ref.: #69480]	glucose-ferment	no	79.908	no

Availability in culture collections External links

[Ref.: #6179]

Culture collection no.

DSM 15911, CECT 5797, CIP 108433

[Ref.: #75529]

SI-ID 354034

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas heilongjiangensis sp. nov., a novel moderately halophilic bacterium isolated from saline and alkaline soil.	Dou G, He W, Liu H, Ma Y	Antonie Van Leeuwenhoek	10.1007/s10482-015-0493-4	2015	*
Phylogeny	Halomonas stenophila sp. nov., a halophilic bacterium that produces sulphate exopolysaccharides with biological activity.	Llamas I, Bejar V, Martinez-Checa F, Martinez-Canovas MJ, Molina I, Quesada E	Int J Syst Evol Microbiol	10.1099/ijs.0.026369-0	2010	*
Phylogeny	Halomonas shengliensis sp. nov., a moderately halophilic, denitrifying, crude-oil-utilizing bacterium.	Wang YN, Cai H, Chi CQ, Lu AH, Lin XG, Jiang ZF, Wu XL	Int J Syst Evol Microbiol	10.1099/ijs.0.64973-0	2007	*
Phylogeny	Halomonas ventosae sp. nov., a moderately halophilic, denitrifying, exopolysaccharide-producing bacterium.	Martinez-Canovas MJ, Quesada E, Llamas I, Bejar V	Int J Syst Evol Microbiol	10.1099/ijs.0.02942-0	2004	*

References

#6179

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15911

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30101

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26457 (see below)

#36733 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75529

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID354034.1 )

#123814 Collection of Institut Pasteur ; Curators of the CIP; CIP 108433

#26457

IJSEM 733 2004 ( DOI 10.1099/ijs.0.02942-0 , PubMed 15143016 )

* These data were automatically processed and therefore are not curated

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Halomonas ventosae CECT 5797

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Change proposal