Name: Halomonas pantelleriensis AAP
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6029

Type strain:

Species: Halomonas pantelleriensis

Strain Designation: AAP

Culture col. no.: DSM 9661, CIP 105506, ATCC 700273

Strain history: CIP <- 1998, DSMZ <- A. Gambacorta, ICB Insituto di Chimica Biomolecolare, Naples, Italy: strain AAP

NCBI tax ID(s): 48727 (species)

SI-ID 13200

LMG 19550, DSM 9661, ATCC 700273, CIP 105506

Section

Halomonas pantelleriensis AAP is a mesophilic, motile bacterium that was isolated from hard sand of the lake of Venere.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Species	**Halomonas pantelleriensis**
	Full Scientific Name (LPSN)	Halomonas pantelleriensis corrig. Romano et al. 1997

	Synonym	"Franzmannia* pantelleriensis"*
	Synonym	Halomonas pantelleriense

Information on morphological and physiological properties Morphology

[Ref.: #121532]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #121532]	Cell shape	rod-shaped

[Ref.: #121532]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.614

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3675]

Culture medium

HALOMONAS PANTELLERIENSE (DSMZ Medium 752)

[Ref.: #3675]

Culture medium growth

[Ref.: #3675]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3675]

Culture medium composition

expand / minimize

[Ref.: #39306]

Culture medium

MEDIUM 284 - for Halomonas pantelleriense

[Ref.: #39306]

Culture medium growth

[Ref.: #39306]

Culture medium composition

expand / minimize

[Ref.: #121532]

Culture medium

CIP Medium 284

[Ref.: #121532]

Culture medium growth

[Ref.: #121532]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3675]		growth	30-35 °C
[Ref.: #39306]		growth	30 °C
[Ref.: #121532]		growth	5-41 °C
[Ref.: #121532]	no	growth	45 °C

[Ref.: #3675]	Temperature range	mesophilic
[Ref.: #39306]	Temperature range	mesophilic
[Ref.: #121532]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.965

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #121532]		NaCl		growth	2-10	%
[Ref.: #121532]		NaCl	no	growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #121532]	esculin ChEBI	-	hydrolysis
[Ref.: #121532]	glucose ChEBI	-	degradation
[Ref.: #121532]	hippurate ChEBI	+	hydrolysis
[Ref.: #121532]	malonate ChEBI	-	assimilation
[Ref.: #121532]	nitrate ChEBI	-	builds gas from
[Ref.: #121532]	nitrate ChEBI	+	reduction
[Ref.: #121532]	nitrite ChEBI	-	builds gas from
[Ref.: #121532]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #121532]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #121532]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #121532]		acetoin ChEBI	-
[Ref.: #121532]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #121532]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121532]	amylase	-
[Ref.: #121532]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121532]	caseinase	-	3.4.21.50
[Ref.: #121532]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121532]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #121532]	gelatinase	-
[Ref.: #121532]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #121532]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121532]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121532]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121532]	oxidase	+
[Ref.: #121532]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121532]	tryptophan deaminase	-
[Ref.: #121532]	tween esterase	-
[Ref.: #121532]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121532]	1188	not determinedn.d.	-	+	-	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	+	-	-	+	-	+	-	+	-	+	+	-	-	-	-	-	-	+	+	-	+	+	+	+	+	-	+	+	-	-	-	-	-	-	+	-	+	+	+	-	-	-	-	-	-	+	-	-	-	-	-	-	+	+	+	-	+	-	-	-	-	-	+	-	+	+	+	+	+	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121532]	8755	-	+	+	+	-	+	-	-	-	-	-	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3675]	Sample type/isolated from	hard sand of the lake of Venere
[Ref.: #3675]	Geographic location (country and/or sea, region)	Pantelleria Island
[Ref.: #3675]	Country	Italy
[Ref.: #3675]	Country ISO 3 Code	ITA
[Ref.: #3675]	Continent	Europe

[Ref.: #121532]	Sample type/isolated from	Environment, Hard sand of the lake of Venere
[Ref.: #121532]	Geographic location (country and/or sea, region)	Pantelleria Island
[Ref.: #121532]	Country	Italy
[Ref.: #121532]	Country ISO 3 Code	ITA
[Ref.: #121532]	Continent	Europe
[Ref.: #121532]	Isolation date	1995
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Terrestrial	#Sandy

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X93493 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	856
Soil Samples	108
Animal Samples	1183
Plant Samples	21
Total Samples	2168

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3675]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121532]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3675]	H.pantelleriense 16S rRNA gene	X93493	1477	ENA	48727 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas pantelleriensis AAP	GCA_900102875	scaffold	GenBank	48727 tax ID	*
[Ref.: #66792]	Halomonas pantelleriensis AAP	2654587879	draft	JGI IMG/M	48727 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halomonas pantelleriensis AAP NCBI: GCA_900102875.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas pantelleriensis AAP NCBI: GCA_900102875.1
[Ref.: #69480]	motile	yes	91.491	no
[Ref.: #69480]	flagellated	yes	79.532	no
[Ref.: #69480]	gram-positive	no	98.785	no
[Ref.: #69480]	anaerobic	no	98.229	no
[Ref.: #69480]	aerobic	yes	92.622	no
[Ref.: #69480]	halophile	yes	91.139	no
[Ref.: #69480]	spore-forming	no	96.386	no
[Ref.: #69480]	glucose-ferment	no	73.334	no
[Ref.: #69480]	thermophile	no	98.54	yes
[Ref.: #69480]	glucose-util	yes	92.948	no

Availability in culture collections External links

[Ref.: #3675]

Culture collection no.

DSM 9661, CIP 105506, ATCC 700273

[Ref.: #75515]

SI-ID 13200

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Structural characterization of the lipid A from the LPS of the haloalkaliphilic bacterium Halomonas pantelleriensis.	Carillo S, Pieretti G, Casillo A, Lindner B, Romano I, Nicolaus B, Parrilli M, Giuliano M, Cammarota M, Lanzetta R, Corsaro MM	Extremophiles	10.1007/s00792-016-0858-2	2016	*
Phylogeny	Halomonas qiaohouensis sp. nov., isolated from salt mine soil in southwest China.	Wang YX, Xiao W, Dong MH, Zhao Q, Li ZY, Lai YH, Cui XL	Antonie Van Leeuwenhoek	10.1007/s10482-014-0189-1	2014	*
Phylogeny	Halomonas alkalitolerans sp. nov., a novel moderately halophilic bacteriun isolated from soda meadow saline soil in Daqing, China.	Wang S, Yang Q, Liu ZH, Sun L, Wei D, Zhang JZ, Song JZ, Wang Y, Song J, Fan JX, Meng XX, Zhang W	J Microbiol	10.1007/s12275-011-0197-z	2011	*

References

#3675

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9661

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39306 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75515

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13200.1 )

#121532 Collection of Institut Pasteur ; Curators of the CIP; CIP 105506
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Halomonas pantelleriensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF