Halomonas pantelleriensis (DSM 9661, AAP, CIP 105506)

Name: Halomonas pantelleriensis (DSM 9661, AAP, CIP 105506)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6029

Type strain

Strain Designation AAP

Culture col. no. DSM 9661 AAP CIP 105506 ATCC 700273

NCBI tax ID(s) 48727

Special Collections DSMZ CIP

History <- A. Gambacorta CIP <- 1998, DSMZ <- A. Gambacorta, ICB Insituto di Chimica Biomolecolare, Naples, Italy: strain AAP

Links

Halomonas pantelleriensis AAP is a Gram-negative, motile, rod-shaped bacterium that was isolated from hard sand of the lake of Venere.

Gram-negative motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13200

LMG 19550,DSM 9661,ATCC 700273,CIP 105506

@ref 20215

Last LPSN update 2026-02-09 11:19:07

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Halomonas

Species Halomonas pantelleriensis

Full scientific name Halomonas pantelleriensis corrig. Romano et al. 1997

Synonyms (2)

Halomonas pantelleriense
Franzmannia pantelleriensis

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
121532	negative	rod-shaped
125438	negative		99.8
125439	negative		99
125439			91.6

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3675	HALOMONAS PANTELLERIENSE (DSMZ Medium 752)	Medium recipe at MediaDive	Name: HALOMONAS PANTELLERIENSE (DSMZ Medium 752) Composition: NaCl 100.0 g/l Yeast extract 10.0 g/l Na2CO3 3.0 g/l Na2-citrate 3.0 g/l KCl 2.0 g/l MgSO4 x 7 H2O 1.0 g/l MnCl2 x 4 H2O FeSO4 x 7 H2O Distilled water
39306	MEDIUM 284 - for Halomonas pantelleriense		Sodium carbonate decahydrate (2.500 g);Distilled water make up to (1000.000ml);Sodium chloride (100.000 g);Potassium chloride (2.000 g);Magnesium sulphate heptahydrate (1.000 g);Agar (15.000 g);Yeast extract (10.000 g);Citric acid (3.000 g);Solution1 -M05
121532	CIP Medium 284	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
3675	positive	growth	30-35
39306	positive	growth	30
121532	positive	growth	5-41
121532	negative	growth	45

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
121532	NaCl	positive	growth	2-10 %
121532	NaCl		growth	0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
121532	4853 ChEBI	esculin	-	hydrolysis
121532	17234 ChEBI	glucose	-	degradation
121532	606565 ChEBI	hippurate	+	hydrolysis
121532	15792 ChEBI	malonate	-	assimilation
121532	17632 ChEBI	nitrate	-	builds gas from
121532	17632 ChEBI	nitrate	+	reduction
121532	16301 ChEBI	nitrite	-	builds gas from
121532	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
121532	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121532	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
121532	15688 ChEBI	acetoin	-
121532	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
121532	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121532	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
121532	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121532	caseinase	-	3.4.21.50
121532	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
121532	gamma-glutamyltransferase	+	2.3.2.2
121532	gelatinase	-
121532	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
121532	lipase	-
68382	lipase (C 14)	-		from API zym
121532	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121532	ornithine decarboxylase	-	4.1.1.17
121532	oxidase	+
121532	phenylalanine ammonia-lyase	+	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
121532	tryptophan deaminase	-
121532	tween esterase	-
121532	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121532	-	+	+	+	-	+	-	-	-	-	-	+	-	-	-	+	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121532	not determinedn.d.	-	+	-	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	+	-	-	+	-	+	-	+	-	+	+	-	-	-	-	-	-	+	+	-	+	+	+	+	+	-	+	+	-	-	-	-	-	-	+	-	+	+	+	-	-	-	-	-	-	+	-	-	-	-	-	-	+	+	+	-	+	-	-	-	-	-	+	-	+	+	+	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Terrestrial	#Sandy

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
3675	hard sand of the lake of Venere	Pantelleria Island	Italy	ITA	Europe
121532	Environment, Hard sand of the lake of Venere	Pantelleria Island	Italy	ITA	Europe	1995

Taxonmaps

69479

Global distribution of 16S sequence X93493 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	856
Soil Samples	108
Animal Samples	1183
Plant Samples	21
Total Samples	2168

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3675	1	Risk group (German classification) According to TRBA 466
121532	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2654587879 annotated assembly for Franzmannia pantelleriensis AAP	scaffold	GCA_900102875	48727.3	2654587879	48727	67.89

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
3675	H.pantelleriense 16S rRNA gene	X93493	1477		48727

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halomonas pantelleriensis AAP
NCBI: GCA_900102875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	91.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	58.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halomonas pantelleriensis AAP
NCBI: GCA_900102875.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.80	no
125438	anaerobic	anaerobicⓘ	no	96.39	no
125438	aerobic	aerobicⓘ	yes	81.67	no
125438	spore-forming	spore-formingⓘ	no	88.39	no
125438	thermophilic	thermophileⓘ	no	98.99	yes
125438	flagellated	motile2+ⓘ	yes	85.51	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Validation List no. 216. Valid publication of new names and new combinations effectively published outside the IJSEM.	Oren A, Goker M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006229	2024
Pathogenicity	Structural characterization of the lipid A from the LPS of the haloalkaliphilic bacterium Halomonas pantelleriensis.	Carillo S, Pieretti G, Casillo A, Lindner B, Romano I, Nicolaus B, Parrilli M, Giuliano M, Cammarota M, Lanzetta R, Corsaro MM	Extremophiles	10.1007/s00792-016-0858-2	2016
Phylogeny	Halomonas qiaohouensis sp. nov., isolated from salt mine soil in southwest China.	Wang YX, Xiao W, Dong MH, Zhao Q, Li ZY, Lai YH, Cui XL	Antonie Van Leeuwenhoek	10.1007/s10482-014-0189-1	2014
Phylogeny	Halomonas alkalitolerans sp. nov., a novel moderately halophilic bacteriun isolated from soda meadow saline soil in Daqing, China.	Wang S, Yang Q, Liu ZH, Sun L, Wei D, Zhang JZ, Song JZ, Wang Y, Song J, Fan JX, Meng XX, Zhang W	J Microbiol	10.1007/s12275-011-0197-z	2011

References

#3675	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9661
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39306	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121532	Collection of Institut Pasteur ; Curators of the CIP; CIP 105506
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halomonas pantelleriensis (DSM 9661, AAP, CIP 105506)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900102875

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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