Halomonas venusta (DSM 4743, ATCC 27125, CCUG 16063)

Name: Halomonas venusta (DSM 4743, ATCC 27125, CCUG 16063)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6019

Type strain

Culture col. no. DSM 4743 ATCC 27125 CCUG 16063 LMG 3445 CIP 74.07 103201 7 more

NCBI tax ID(s) 44935

Special Collections DSMZ CCUG JCM CIP

Links

Halomonas venusta DSM 4743 is a mesophilic, Gram-negative, motile prokaryote that was isolated from seawater.

Gram-negative motile rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 92227

LMG 3445,ATCC 27125,DSM 4743,NCMB 1979,CCUG 16063,CIP 103201,NCIMB 1979,IAM12554,CIP 74.07,NBRC 102221,JCM 20634,CGMCC 1.2315

@ref 20215

Last LPSN update 2025-12-16 09:48:12

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Halomonas

Species Halomonas venusta

Full scientific name Halomonas venusta (Baumann et al. 1972) Dobson and Franzmann 1996

Synonyms (4)

Deleya venusta
Vreelandella venusta
Halomonas hydrothermalis
Alcaligenes venustus

BacDive ID	Other strains from **Halomonas venusta** (11)	Type strain
23057	H. venusta HG 1, DSM 7049
138949	H. venusta CIP 74.7
142996	H. venusta CCUG 16067, ATCC 35138, JCM 21025, CCUG 16066, ...
142997	H. venusta CCUG 16068
142998	H. venusta CCUG 16069
142999	H. venusta CCUG 16070
143000	H. venusta CCUG 16071, ATCC 35139, JCM 21026, IAM 14111
143001	H. venusta CCUG 16072
143002	H. venusta CCUG 16073
143003	H. venusta CCUG 16074
163074	H. venusta JCM 21024, ATCC 35137, CCUG 16064, IAM 14109, ...

Morphology

Cell morphology

@ref	Gram stain	Cell shape
123815	negative	rod-shaped
125439	negative
125438	negative

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1749	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
1749	MARINE AGAR (DSMZ Medium 123)	Medium recipe at MediaDive	Name: MARINE AGAR (DSMZ Medium 123) Composition: NaCl 24.0 g/l Agar 15.0 g/l MgCl2 x 6 H2O 11.0 g/l Bacto peptone 5.0 g/l Na2SO4 4.0 g/l CaCl2 x 6 H2O 2.0 g/l Yeast extract 1.0 g/l KCl 0.7 g/l KBr 0.1 g/l SrCl2 x 6 H2O 0.04 g/l H3BO3 0.03 g/l NaSiO3 x 9 H2O 0.005 g/l NaF 0.003 g/l NH4NO3 0.002 g/l Fe(III)PO4 x 4 H2O 0.001 g/l Distilled water
36494	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
123815	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
1749	positive	growth	26	mesophilic
1749	positive	growth	25
36494	positive	growth	25	mesophilic
46428	positive	growth	26-30	mesophilic
67770	positive	growth	25	mesophilic
123815	positive	growth	5-41
123815	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	90.8

Spore formation

@ref	Spore formation	Confidence
125439		99.5
125438		90.225

Halophily

@ref	Salt	Growth	Tested relation	Concentration
123815	NaCl	positive	growth	0-10 %

Observation

67770

Observationquinones: Q-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
123815	16947 ChEBI	citrate	+	carbon source
123815	4853 ChEBI	esculin	-	hydrolysis
123815	606565 ChEBI	hippurate	-	hydrolysis
123815	15792 ChEBI	malonate	-	assimilation
123815	17632 ChEBI	nitrate	+	reduction
123815	17632 ChEBI	nitrate	-	respiration
123815	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
123815	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123815	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123815	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123815	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
123815	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123815	caseinase	-	3.4.21.50
123815	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
123815	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123815	gamma-glutamyltransferase	+	2.3.2.2
123815	gelatinase	-
123815	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
123815	lipase	-
68382	lipase (C 14)	-		from API zym
123815	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123815	ornithine decarboxylase	-	4.1.1.17
123815	oxidase	+
123815	phenylalanine ammonia-lyase	+	4.3.1.24
123815	protease	-
68382	trypsin	-	3.4.21.4	from API zym
123815	tryptophan deaminase	-
123815	tween esterase	-
123815	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123815	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	+	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
123815	not determinedn.d.	+	+	-	+	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	+	+	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	+	+	+	+	+	+	-	-	+	-	-	-	-	+	+	+	-	+	-	-	+	+	+	+	+	+	+	-	+	-	+	+	+	+	+	+	+	-	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type
1749	seawater
46428	Seawater
123815	Environment, Seawater

Taxonmaps

69479

Global distribution of 16S sequence HQ727663 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	62
Soil Samples	3
Animal Samples	12
Plant Samples	1
Total Samples	78

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1749	1	Risk group (German classification) According to TRBA 466
123815	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1610763v1 assembly for Vreelandella venusta DSM 4743	contig	GCA_016107635	44935.14	8115134734	44935	66.78
66792	ASM798960v1 assembly for Vreelandella venusta NBRC 102221	contig	GCA_007989605	44935.11		44935	64.38

Genome browser: GCA_016107635

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Halomonas venusta strain DSM4743 16S ribosomal RNA gene, partial sequence	HQ727663	1340	44935
20218	Deleya venusta 16S ribosomal RNA (16S rRNA) gene	L42618	1479	44935
20218	Halomonas venusta gene for 16S rRNA, partial sequence, strain: NBRC 102221	AB681735	1460	44935
1749	Halomonas venusta partial 16S rRNA gene, strain DSM 4743	AJ306894	1530	44935
124043	Halomonas venusta strain DSM 4743 16S ribosomal RNA gene, partial sequence.	MK357745	1008	44935

GC content

@ref	GC-content (mol%)	Method
67770	54.1	Buoyant density centrifugation (BD)
67770	52	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halomonas venusta DSM 4743
NCBI: GCA_016107635

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.50	no
125439	motility	BacteriaNetⓘ	yes	85.60	no
125439	gram_stain	BacteriaNetⓘ	negative	98.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halomonas venusta strain DSM 4743
PATRIC: 44935.14

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	95.00	no
125438	spore-forming	spore-formingⓘ	no	90.23	no
125438	aerobic	aerobicⓘ	yes	83.44	no
125438	thermophilic	thermophileⓘ	no	97.53	yes
125438	flagellated	motile2+ⓘ	yes	83.08	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome analysis of haloalkaline isolates from the soda saline crater lake of Isabel Island; comparative genomics and potential metabolic analysis within the genus Halomonas.	Hernandez-Soto LM, Martinez-Abarca F, Ramirez-Saad H, Lopez-Perez M, Aguirre-Garrido JF.	BMC Genomics	10.1186/s12864-023-09800-9	2023
	Diversity and Screening of Cellulolytic Microorganisms from Mangrove Forests, Natural Parks, Paddy Field, and Sugarcane Plantation in Panay Island, Philippines.	Gatpatan IGT, Cabulong RB, Sadaba RB.	Int J Microbiol	10.1155/2024/5573158	2024
Phylogeny	A diverse group of halophilic bacteria exist in Lunsu, a natural salt water body of Himachal Pradesh, India.	Gupta S, Sharma P, Dev K, Srivastava M, Sourirajan A.	Springerplus	10.1186/s40064-015-1028-1	2015
Metabolism	Marinobacter sp. from marine sediments produce highly stable surface-active agents for combatting marine oil spills.	Raddadi N, Giacomucci L, Totaro G, Fava F.	Microb Cell Fact	10.1186/s12934-017-0797-3	2017
Genetics	Complete Genome Sequence of Halomonas venusta Type Strain DSM 4743, a Moderately Halophilic Marine Bacterium.	Martinez-Abarca F, Hernandez-Soto LM, Ramirez-Saad HC, Aguirre-Garrido JF	Microbiol Resour Announc	10.1128/MRA.00144-21	2021
Phylogeny	Halomonas humidisoli Sp. Nov., Isolated From Saline-Alkaline Soil.	Liu H, Tang L, Zhao J, Miao S, Gong Q, Ma L, Zhang G	Curr Microbiol	10.1007/s00284-020-02291-x	2021
Phylogeny	Halomonas lutescens sp. nov., a halophilic bacterium isolated from a lake sediment.	Wang T, Wei X, Xin Y, Zhuang J, Shan S, Zhang J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001413	2016
Phylogeny	Halomonas zhaodongensis sp. nov., a slightly halophilic bacterium isolated from saline-alkaline soils in Zhaodong, China.	Jiang J, Pan Y, Meng L, Hu S, Zhang X, Hu B, Meng J, Li C, Huang H, Wang K, Su T	Antonie Van Leeuwenhoek	10.1007/s10482-013-9976-3	2013
Phylogeny	Halomonas andesensis sp. nov., a moderate halophile isolated from the saline lake Laguna Colorada in Bolivia.	Guzman D, Quillaguaman J, Munoz M, Hatti-Kaul R	Int J Syst Evol Microbiol	10.1099/ijs.0.014522-0	2009
Phylogeny	Halomonas alkaliphila sp. nov., a novel halotolerant alkaliphilic bacterium isolated from a salt pool in Campania (Italy).	Romano I, Lama L, Nicolaus B, Poli A, Gambacorta A, Giordano A	J Gen Appl Microbiol	10.2323/jgam.52.339	2006

References

#1749	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4743
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#36494	; Curators of the CIP;
#46428	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 16063
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123815	Collection of Institut Pasteur ; Curators of the CIP; CIP 103201
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halomonas venusta (DSM 4743, ATCC 27125, CCUG 16063)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016107635

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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