Name: Chromohalobacter salexigens 1H11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5998

Type strain:

Species: Chromohalobacter salexigens

Strain Designation: 1H11

Culture col. no.: DSM 3043, CIP 106854, CCM 4921, CECT 5384, ATCC BAA-138, NCIMB 13768

Strain history: CIP <- 2000, A. Ventosa, University of Sevilla, Sevilla, Spain, Strain 1H11 <- DSMZ <- R.H. Vreeland

NCBI tax ID(s): 290398 (strain), 158080 (species)

SI-ID 47689

DSM 3043, NCIMB 2238, CCM4921, CECT5384, CIP 106854, CCM 3757, ATCC BAA-138, KCTC 12941, NCIMB 13768

Other strains from Chromohalobacter salexigens

C. salexigens JCM 15323

Section

Chromohalobacter salexigens 1H11 is an obligate aerobe, mesophilic, motile bacterium that was isolated from solar salt facility.

motile
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Chromohalobacter*
	Species	**Chromohalobacter salexigens**
	Full Scientific Name (LPSN)	Chromohalobacter salexigens Arahal et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #122366]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.923

[Ref.: #122366]	Cell shape	rod-shaped

[Ref.: #122366]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.517

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1282]

Culture medium

HALOMONAS MEDIUM (DSMZ Medium 276)

[Ref.: #1282]

Culture medium growth

[Ref.: #1282]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1282]

Culture medium composition

expand / minimize

[Ref.: #38650]

Culture medium

Marine agar (MA)

[Ref.: #38650]

Culture medium growth

[Ref.: #38650]

Culture medium composition

expand / minimize

[Ref.: #122366]

Culture medium

CIP Medium 13

[Ref.: #122366]

Culture medium growth

[Ref.: #122366]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #1282]		growth	30 °C
[Ref.: #38650]		growth	37 °C
[Ref.: #122366]		growth	15-41 °C
[Ref.: #122366]	no	growth	5 °C
[Ref.: #122366]	no	growth	45 °C

[Ref.: #1282]	Temperature range	mesophilic
[Ref.: #38650]	Temperature range	mesophilic
[Ref.: #122366]	Temperature range	psychrophilic
[Ref.: #122366]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122366]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.609

	Salt	Tested relation		Salt conc.
[Ref.: #122366]	NaCl		growth	6-10	%
[Ref.: #122366]	NaCl	no	growth	0	%
[Ref.: #122366]	NaCl	no	growth	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122366]	citrate ChEBI	-	carbon source
[Ref.: #122366]	esculin ChEBI	-	hydrolysis
[Ref.: #122366]	hippurate ChEBI	-	hydrolysis
[Ref.: #122366]	malonate ChEBI	-	assimilation
[Ref.: #122366]	nitrate ChEBI	+	reduction
[Ref.: #122366]	nitrate ChEBI	-	respiration
[Ref.: #122366]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #122366]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122366]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122366]	amylase	-
[Ref.: #122366]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122366]	caseinase	-	3.4.21.50
[Ref.: #122366]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122366]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #122366]	gelatinase	-
[Ref.: #122366]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122366]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122366]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122366]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122366]	oxidase	-
[Ref.: #122366]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122366]	tryptophan deaminase	-
[Ref.: #122366]	tween esterase	-
[Ref.: #122366]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122366]	1878	not determinedn.d.	+	+	+	+	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	+	+	+	+	+	+	-	+	-	+	+	+	-	+	+	-	+	+	-	+	-	-	+	+	+	+	-	+	+	+	+	-	-	-	+	-	+	+	+	-	-	-	-	-	-	+	+	+	-	+	-	-	-	+	+	-	+	+	-	-	-	-	-	-	+	+	+	+	+	-	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122366]	9862	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	+	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	quinate degradation	100	2 of 2
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	gallate degradation	100	5 of 5
[Ref.: #66794]	tetrahydrofolate metabolism	100	14 of 14
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	photosynthesis	92.86	13 of 14
[Ref.: #66794]	proline metabolism	90.91	10 of 11
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	arginine metabolism	83.33	20 of 24
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	vitamin B6 metabolism	81.82	9 of 11
[Ref.: #66794]	d-xylose degradation	81.82	9 of 11
[Ref.: #66794]	pyrimidine metabolism	80	36 of 45
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	D-cycloserine biosynthesis	80	4 of 5
[Ref.: #66794]	degradation of sugar acids	80	20 of 25
[Ref.: #66794]	purine metabolism	78.72	74 of 94
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	glutathione metabolism	78.57	11 of 14
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	urea cycle	76.92	10 of 13
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	lactate fermentation	75	3 of 4
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	lipid metabolism	70.97	22 of 31
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	sulfate reduction	69.23	9 of 13
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	sulfoquinovose degradation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	oxidative phosphorylation	64.84	59 of 91
[Ref.: #66794]	lysine metabolism	64.29	27 of 42
[Ref.: #66794]	tyrosine metabolism	64.29	9 of 14
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	carnitine metabolism	62.5	5 of 8
[Ref.: #66794]	tryptophan metabolism	60.53	23 of 38
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	creatinine degradation	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	degradation of pentoses	57.14	16 of 28
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	histidine metabolism	55.17	16 of 29
[Ref.: #66794]	phenol degradation	55	11 of 20
[Ref.: #66794]	ascorbate metabolism	54.55	12 of 22
[Ref.: #66794]	polyamine pathway	52.17	12 of 23
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	degradation of hexoses	50	9 of 18
[Ref.: #66794]	arachidonic acid metabolism	50	9 of 18
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	40	4 of 10
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	38.46	5 of 13
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	starch degradation	30	3 of 10
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	carotenoid biosynthesis	27.27	6 of 22
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	daunorubicin biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1282]	Sample type/isolated from	solar salt facility
[Ref.: #1282]	Geographic location (country and/or sea, region)	Bonaire
[Ref.: #1282]	Country	Netherlands Antilles
[Ref.: #1282]	Country ISO 3 Code	NLD
[Ref.: #1282]	Continent	Middle and South America

[Ref.: #122366]	Sample type/isolated from	Saltern
[Ref.: #122366]	Geographic location (country and/or sea, region)	Bonaire, Antilles
[Ref.: #122366]	Country	Netherlands
[Ref.: #122366]	Country ISO 3 Code	NLD
[Ref.: #122366]	Continent	Europe
[Ref.: #122366]	Isolation date	1974
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Plant (Factory)
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1282]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122366]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Halomonas elongata 16S rRNA gene, strain DSM 3043	AJ295146	1531	ENA	2746 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chromohalobacter salexigens DSM 3043	GCA_000055785	complete	GenBank	290398 tax ID	*
[Ref.: #66792]	Chromohalobacter salexigens DSM 3043	290398.11	complete	PATRIC	290398 tax ID	*
[Ref.: #66792]	Chromohalobacter salexigens 1H11, DSM 3043	637000075	complete	JGI IMG/M	290398 tax ID	*

[Ref.: #1282]

GC-content

60.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chromohalobacter salexigens DSM 3043 DSM 3043 NCBI: GCA_000055785.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chromohalobacter salexigens DSM 3043 DSM 3043 NCBI: GCA_000055785.1
[Ref.: #69480]	motile	yes	92.205	no
[Ref.: #69480]	flagellated	no	61.518	no
[Ref.: #69480]	gram-positive	no	98.616	no
[Ref.: #69480]	anaerobic	no	98.979	no
[Ref.: #69480]	aerobic	yes	90.751	no
[Ref.: #69480]	halophile	yes	96.227	no
[Ref.: #69480]	spore-forming	no	96.091	no
[Ref.: #69480]	thermophile	no	98.675	yes
[Ref.: #69480]	glucose-util	yes	95.993	no
[Ref.: #69480]	glucose-ferment	no	51.329	no

Availability in culture collections External links

[Ref.: #1282]

Culture collection no.

DSM 3043, CIP 106854, CCM 4921, CECT 5384, ATCC BAA-138, NCIMB 13768

[Ref.: #75487]

SI-ID 47689

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Physiological response of the moderately halophilic psychrotolerant strain Chromohalobacter sp. N1 to salinity change and low temperature.	Anan'ina LN, Gorbunov AA, Pyankova AA	Can J Microbiol	10.1139/cjm-2020-0299	2021	*
Metabolism	Salt Mediated Modulation of Autolysis of Thermolysin-Like Proteinase, Salilysin, Isolated from a Moderate Halophile, Chromohalobacter salexigens DSM3043.	Ishibashi M, Tanaka R, Yamasaki S, Tokunaga H, Arakawa T, Tokunaga M	Protein J	10.1007/s10930-021-09964-x	2021	*
Enzymology	Salt-enhanced processing, proteolytic activity and stability of halophilic thermolysin-like proteinase, salilysin, isolated from a moderate halophile, Chromohalobacter salexigens DSM3043.	Tanaka R, Yamasaki S, Ishibashi M, Tokunaga H, Arakawa T, Tokunaga M	Int J Biol Macromol	10.1016/j.ijbiomac.2020.07.050	2020	*
Metabolism	Role of N,N-Dimethylglycine and Its Catabolism to Sarcosine in Chromohalobacter salexigens DSM 3043.	Yang T, Shao YH, Guo LZ, Meng XL, Yu H, Lu WD	Appl Environ Microbiol	10.1128/AEM.01186-20	2020	*
Metabolism	The crystal structure of the tetrameric DABA-aminotransferase EctB, a rate-limiting enzyme in the ectoine biosynthesis pathway.	Hillier HT, Altermark B, Leiros I	FEBS J	10.1111/febs.15265	2020	*
Metabolism	Glycine Betaine Monooxygenase, an Unusual Rieske-Type Oxygenase System, Catalyzes the Oxidative N-Demethylation of Glycine Betaine in Chromohalobacter salexigens DSM 3043.	Shao YH, Guo LZ, Zhang YQ, Yu H, Zhao BS, Pang HQ, Lu WD	Appl Environ Microbiol	10.1128/AEM.00377-18	2018	*
Phylogeny	Pistricoccus aurantiacus gen. nov., sp. nov., a moderately halophilic bacterium isolated from a shark.	Xu ZX, Liang QY, Lu DC, Chen GJ, Du ZJ	Antonie Van Leeuwenhoek	10.1007/s10482-016-0760-z	2016	*
Phylogeny	Larsenia salina gen. nov., sp. nov., a new member of the family Halomonadaceae based on multilocus sequence analysis.	Leon MJ, Sanchez-Porro C, de la Haba RR, Llamas I, Ventosa A	Syst Appl Microbiol	10.1016/j.syapm.2014.07.006	2014	*
Metabolism	Investigating the physiological roles of low-efficiency D-mannonate and D-gluconate dehydratases in the enolase superfamily: pathways for the catabolism of L-gulonate and L-idonate.	Wichelecki DJ, Vendiola JA, Jones AM, Al-Obaidi N, Almo SC, Gerlt JA	Biochemistry	10.1021/bi500837w	2014	*
Genetics	Cys139Ser mutation in dimeric nucleoside diphosphate kinase generates catalytically competent monomer.	Tokunaga H, Arakawa T, Tokunaga M	Int J Biol Macromol	10.1016/j.ijbiomac.2014.02.016	2014	*
Metabolism	The stimulatory effect of mannitol on levan biosynthesis: Lessons from metabolic systems analysis of Halomonas smyrnensis AAD6(T.).	Ates O, Arga KY, Oner ET	Biotechnol Prog	10.1002/btpr.1823	2013	*
Metabolism	Halophilic properties of metal binding protein characterized by high histidine content from Chromohalobacter salexigens DSM3043.	Yamaguchi R, Arakawa T, Tokunaga H, Ishibashi M, Tokunaga M	Protein J	10.1007/s10930-011-9390-5	2012	*
Enzymology	Cloning, expression, purification, crystallization and X-ray crystallographic analysis of glucuronic acid dehydrogenase from Chromohalobacter salexigens.	Ahn JW, Lee SY, Kim S, Cho SJ, Lee SB, Kim KJ	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309111012437	2011	*
Genetics	Genome-scale reconstruction of metabolic network for a halophilic extremophile, Chromohalobacter salexigens DSM 3043.	Ates O, Oner ET, Arga KY	BMC Syst Biol	10.1186/1752-0509-5-12	2011	*
Enzymology	Isethionate formation from taurine in Chromohalobacter salexigens: purification of sulfoacetaldehyde reductase.	Krejcik Z, Hollemeyer K, Smits THM, Cook AM	Microbiology (Reading)	10.1099/mic.0.036699-0	2010	*
Enzymology	Racemase activity effected by two dehydrogenases in sulfolactate degradation by Chromohalobacter salexigens: purification of (S)-sulfolactate dehydrogenase.	Denger K, Cook AM	Microbiology (Reading)	10.1099/mic.0.034736-0	2009	*
Metabolism	Osmoprotection of Salmonella enterica serovar Typhimurium by Ngamma-acetyldiaminobutyrate, the precursor of the compatible solute ectoine.	Garcia-Estepa R, Canovas D, Iglesias-Guerra F, Ventosa A, Csonka LN, Nieto JJ, Vargas C	Syst Appl Microbiol	10.1016/j.syapm.2006.01.008	2006	*
Pathogenicity	Contribution of chemical changes in membrane lipids to the osmoadaptation of the halophilic bacterium Chromohalobacter salexigens.	Vargas C, Kallimanis A, Koukkou AI, Calderon MI, Canovas D, Iglesias-Guerra F, Drainas C, Ventosa A, Nieto JJ	Syst Appl Microbiol	10.1016/j.syapm.2005.03.014	2005	*
Metabolism	Complex regulation of the synthesis of the compatible solute ectoine in the halophilic bacterium Chromohalobacter salexigens DSM 3043T.	Calderon MI, Vargas C, Rojo F, Iglesias-Guerra F, Csonka LN, Ventosa A, Nieto JJ	Microbiology (Reading)	10.1099/mic.0.27122-0	2004	*
Metabolism	The high salt requirement of the moderate halophile Chromohalobacter salexigens DSM3043 can be met not only by NaCl but by other ions.	O'Connor K, Csonka LN	Appl Environ Microbiol	10.1128/AEM.69.10.6334-6336.2003	2003	*
Phylogeny	Chromohalobacter salexigens sp. nov., a moderately halophilic species that includes Halomonas elongata DSM 3043 and ATCC 33174.	Arahal DR, Garcia MT, Vargas C, Canovas D, Nieto JJ, Ventosa A	Int J Syst Evol Microbiol	10.1099/00207713-51-4-1457	2001	*
Stress	Role of carnitine in adaptation of Chromohalobacter salexigens DSM 3043 and its mutants to osmotic and temperature stress in defined medium.	Meng XL, Gao X, Si YM, Xu LL, Guo LZ, Lu WD	Extremophiles	10.1007/s00792-022-01276-x	2022	*
	Establishment of a markerless gene deletion system in Chromohalobacter salexigens DSM 3043.	Shao YH, Guo LZ, Yu H, Zhao BS, Lu WD	Extremophiles	10.1007/s00792-017-0946-y	2017	*

References

#1282

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3043

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38650 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75487

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47689.1 )

#122366 Collection of Institut Pasteur ; Curators of the CIP; CIP 106854
* These data were automatically processed and therefore are not curated

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