Name: Chromohalobacter beijerinckii L 593
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5995

Type strain:

Species: Chromohalobacter beijerinckii

Strain Designation: L 593

Culture col. no.: DSM 7218, ATCC 19372, NCIB 9041, CCUG 49679, CIP 106957, LMG 2148, NCCB 35008, NRRL B-3153, NCIMB 9041, JCM 21422, IAM 14940, JCM 13305, NBRC 103041, Delft E III.9.23.1, CCUG 106957

Strain history: CIP <- 2001, LMG <- 1977, ATCC <- NCIB <- 1959, LMD

NCBI tax ID(s): 86179 (species)

SI-ID 3940

LMG 2148, ATCC 19372, NCIB 9041, CIP 106957, DSM 7218, NCIMB 9041, LMD 35.8, NCCB 35008, CCUG 49679, NRRL B-3153, CCUG 106957, JCM 13305, IAM 14940, JCM 21422, NBRC 103041

Section

Chromohalobacter beijerinckii L 593 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from salted beans.

Gram-negative
motile
rod-shaped
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Chromohalobacter*
	Species	**Chromohalobacter beijerinckii**
	Full Scientific Name (LPSN)	Chromohalobacter beijerinckii (Hof 1935) Peçonek et al. 2006

Synonym

Pseudomonas beijerinckii

Information on morphological and physiological properties Morphology

[Ref.: #116774]	Gram stain	negative

[Ref.: #116774]	Cell shape	rod-shaped

[Ref.: #116774]	Motility	yes

[Ref.: #116774]	Pigment production	no
[Ref.: #116774]	Pigment name	Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3056]

Culture medium

10% MH MEDIUM (DSMZ Medium 593)

[Ref.: #3056]

Culture medium growth

[Ref.: #3056]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3056]

Culture medium composition

expand / minimize

[Ref.: #33025]

Culture medium

Marine agar (MA)

[Ref.: #33025]

Culture medium growth

[Ref.: #33025]

Culture medium composition

expand / minimize

[Ref.: #116774]

Culture medium

CIP Medium 13

[Ref.: #116774]

Culture medium growth

[Ref.: #116774]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3056]		growth	26 °C
[Ref.: #33025]		growth	25 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #116774]		growth	10-41 °C
[Ref.: #116774]	no	growth	5 °C

[Ref.: #3056]	Temperature range	mesophilic
[Ref.: #33025]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #116774]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116774]

Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #116774]		NaCl		growth	0-8	%
[Ref.: #116774]		NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116774]	citrate ChEBI	+	carbon source
[Ref.: #116774]	esculin ChEBI	+	hydrolysis
[Ref.: #116774]	nitrate ChEBI	+	reduction
[Ref.: #116774]	nitrate ChEBI	-	respiration
[Ref.: #116774]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116774]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #116774]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116774]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #116774]	amylase	+
[Ref.: #116774]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116774]	caseinase	+	3.4.21.50
[Ref.: #116774]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #116774]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116774]	gelatinase	+
[Ref.: #116774]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116774]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116774]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116774]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116774]	oxidase	+
[Ref.: #116774]	protease	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #116774]	tryptophan deaminase	-
[Ref.: #116774]	tween esterase	-
[Ref.: #116774]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116774]	1922	not determinedn.d.	+	+	+	+	-	-	-	+	+	+	-	-	+	+	-	+	+	+	+	+	+	+	+	-	-	+	-	-	-	-	-	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	+	+	-	+	-	-	+	+	+	+	+	+	-	+	-	-	+	-	-	-	-	+	+	-	-	+	+	+	-	-	-	-	-	+	-	+	+	+	+	+	+	+	-	-	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116774]	9944	-	+	+	+	-	+	-	-	+	-	+	+	-	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3056]	Sample type/isolated from	salted beans
[Ref.: #3056]	Geographic location (country and/or sea, region)	Baltic Sea

[Ref.: #58653]	Sample type/isolated from	Salted beans ?

[Ref.: #67770]	Sample type/isolated from	Salted beans
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681921 (>99% sequence identity) for Chromohalobacter from Microbeatlas

Aquatic Samples	74
Soil Samples	8
Animal Samples	45
Plant Samples	38
Total Samples	165

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3056]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116774]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Chromohalobacter beijerinckii gene for 16S rRNA, strain: ATCC 19372	AB021386	1495	ENA	86179 tax ID	*
[Ref.: #20218]	Chromohalobacter beijerinckii gene for 16S rRNA, partial sequence, strain: NBRC 103041	AB681921	1465	ENA	86179 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chromohalobacter beijerinckii DSM 7218	GCA_023061185	contig	GenBank	86179 tax ID	*

[Ref.: #3056]	GC-content	60.7 mol%
[Ref.: #67770]	GC-content	60.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chromohalobacter beijerinckii DSM 7218 NCBI: GCA_023061185.1
[Ref.: #69480]	flagellated	no	56.584	no
[Ref.: #69480]	gram-positive	no	98.578	no
[Ref.: #69480]	anaerobic	no	99.323	no
[Ref.: #69480]	aerobic	yes	91.398	no
[Ref.: #69480]	halophile	yes	95.931	no
[Ref.: #69480]	spore-forming	no	97.088	no
[Ref.: #69480]	motile	yes	90.663	no
[Ref.: #69480]	glucose-ferment	no	53.317	no
[Ref.: #69480]	thermophile	no	98.147	yes
[Ref.: #69480]	glucose-util	yes	94.022	no

Availability in culture collections External links

[Ref.: #3056]

Culture collection no.

DSM 7218, ATCC 19372, NCIB 9041, CCUG 49679, CIP 106957, LMG 2148, NCCB 35008, NRRL B-3153, NCIMB 9041, JCM 21422, IAM 14940, JCM 13305, NBRC 103041, Delft E III.9.23.1, CCUG 106957

[Ref.: #75484]

SI-ID 3940

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Larsenimonas suaedae sp. nov., a moderately halophilic, endophytic bacterium isolated from the halophyte Suaeda salsa.	Xia ZJ, Wu HZ, Cui CX, Chen Q, Zhao GY, Wang HX, Dai MX	Int J Syst Evol Microbiol	10.1099/ijsem.0.001126	2016	*
Phylogeny	Chromohalobacter japonicus sp. nov., a moderately halophilic bacterium isolated from a Japanese salty food.	Sanchez-Porro C, Tokunaga H, Tokunaga M, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.65212-0	2007	*
Phylogeny	Reclassification of Pseudomonas beijerinckii Hof 1935 as Chromohalobacter beijerinckii comb. nov., and emended description of the species.	Peconek J, Gruber C, Gallego V, Ventosa A, Busse HJ, Kampfer P, Radax C, Stan-Lotter H	Int J Syst Evol Microbiol	10.1099/ijs.0.64355-0	2006	*
Phylogeny	Chromohalobacter sarecensis sp. nov., a psychrotolerant moderate halophile isolated from the saline Andean region of Bolivia.	Quillaguaman J, Delgado O, Mattiasson B, Hatti-Kaul R	Int J Syst Evol Microbiol	10.1099/ijs.0.63153-0	2004	*

References

#3056

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7218

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33025 ; Curators of the CIP;
#58653 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 49679

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75484

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3940.1 )

#116774 Collection of Institut Pasteur ; Curators of the CIP; CIP 106957
* These data were automatically processed and therefore are not curated

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Chromohalobacter beijerinckii DSM 7218

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