Halanaerobacter jeridensis (DSM 23230, JCM 16696, CEJFG43)

Name: Halanaerobacter jeridensis (DSM 23230, JCM 16696, CEJFG43)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5982

Type strain

Strain Designation CEJFG43

Culture col. no. DSM 23230 JCM 16696 CEJFG43

NCBI tax ID(s) 706427

Special Collections DSMZ JCM Literature strains

History <- D. Alazard, Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France; CEJFG43 D. Alazard CEJFG43.

Links

Halanaerobacter jeridensis CEJFG43 is an anaerobe, thermophilic, Gram-negative prokaryote that was isolated from black sediment below the salt crust of a hypersaline lake.

Gram-negative motile anaerobe thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402114

JCM 16696,DSM 23230

@ref 20215

Last LPSN update 2026-02-09 11:19:06

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Halanaerobiales

Family Halobacteroidaceae

Genus Halanaerobacter

Species Halanaerobacter jeridensis

Full scientific name Halanaerobacter jeridensis Mezghani et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Motility
30446	negative	4.25 µm	1.2 µm

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16760	HALANAEROBACTER JERIDENSE MEDIUM (DSMZ Medium 1375)		Medium recipe at MediaDive	Name: HALANAEROBACTER JERIDENSE MEDIUM (DSMZ Medium 1375) Composition: Na2CO3 25.3 g/l Glucose 15.44 g/l MgCl2 x 6 H2O 10.0 g/l KCl 2.0 g/l NH4Cl 1.0 g/l K2HPO4 x 3 H2O 0.5 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l ZnSO4 x 7 H2O 0.0018 g/l CoSO4 x 7 H2O 0.0018 g/l CaCl2 x 2 H2O 0.001 g/l Resazurin 0.001 g/l FeSO4 x 7 H2O 0.001 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l CuSO4 x 5 H2O 0.0001 g/l H3BO3 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l Na2SeO3 x 5 H2O 3e-06 g/l Na2S x 9 H2O Yeast extract L-Cysteine Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16760	positive	growth	40	thermophilic
30446	positive	growth	20-60
30446	positive	optimum	45	thermophilic
67770	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
30446	positive	optimum	8.3
30446	positive	growth	5.5-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30446	anaerobe
125439	anaerobe	99.6

Spore formation

30446

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30446	NaCl	positive	growth	6-30 %
30446	NaCl	positive	optimum	15 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30446	28260 ChEBI	galactose	+	carbon source
30446	17754 ChEBI	glycerol	+	carbon source
30446	15361 ChEBI	pyruvate	+	carbon source
30446	16634 ChEBI	raffinose	+	carbon source
30446	33942 ChEBI	ribose	+	carbon source
30446	18222 ChEBI	xylose	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Terrestrial	#Sediment
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16760	black sediment below the salt crust of a hypersaline lake	El Jerid lake	Tunisia	TUN	Africa
67770	Sediment collected below the salt crust on the hypersaline EI Jerid lake in southern Tunisia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16760	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1690831v1 assembly for Halanaerobacter jeridensis DSM 23230	contig	GCA_016908315	706427.3	2901107112	706427	64.2

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16760	Halanaerobacter jeridensis strain CEJFG43 16S ribosomal RNA gene, partial sequence	GU265900	1435		706427

GC content

@ref	GC-content (mol%)	Method
16760	33.3	high performance liquid chromatography (HPLC)
30446	33.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halanaerobacter jeridensis DSM 23230
NCBI: GCA_016908315

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	75.40	no
125439	motility	BacteriaNetⓘ	yes	79.30	no
125439	gram_stain	BacteriaNetⓘ	positive	84.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halanaerobacter jeridensis strain DSM 23230
PATRIC: 706427.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	81.25	no
125438	anaerobic	anaerobicⓘ	yes	87.17	yes
125438	spore-forming	spore-formingⓘ	yes	57.27	no
125438	aerobic	aerobicⓘ	no	93.88	no
125438	thermophilic	thermophileⓘ	no	88.07	yes
125438	flagellated	motile2+ⓘ	yes	76.43	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Exploring Acetogenesis in Firmicutes: From Phylogenetic Analysis to Solid Medium Cultivation with Solid-Phase Electrochemical Isolation Equipments.	Kimura ZI, Kuriyama H, Iwasaki Y.	Microorganisms	10.3390/microorganisms11122976	2023
Phylogeny	Halanaerobacter jeridensis sp. nov., isolated from a hypersaline lake.	Mezghani M, Alazard D, Karray F, Cayol JL, Joseph M, Postec A, Fardeau ML, Tholozan JL, Sayadi S	Int J Syst Evol Microbiol	10.1099/ijs.0.036301-0	2011

References

#16760	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23230
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26781	IJSEM 1970 2012 ( DOI 10.1099/ijs.0.036301-0 , PubMed 22003033 )
#30446	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26781
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halanaerobacter jeridensis (DSM 23230, JCM 16696, CEJFG43)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016908315

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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