Name: Haladaptatus paucihalophilus DX253
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5971

Type strain:

Species: Haladaptatus paucihalophilus

Strain Designation: DX253

Culture col. no.: DSM 18195, ATCC BAA-1313, JCM 13897, KCTC 4006, CGMCC 1.8953

Strain history: K. N. Savage DX253.

NCBI tax ID(s): 797209 (strain), 367189 (species)

SI-ID 297215

ATCC BAA-1313, DSM 18195, JCM 13897, KCTC 4006

Section

Haladaptatus paucihalophilus DX253 is a mesophilic archaeon that was isolated from low-salt, sulfide- and sulfur-rich spring.

mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halobacteriaceae*
	Genus	*Haladaptatus*
	Species	**Haladaptatus paucihalophilus**
	Full Scientific Name (LPSN)	Haladaptatus paucihalophilus Savage et al. 2007

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7419]

Culture medium

HALOPHILIC MEDIUM (DSMZ Medium 1125)

[Ref.: #7419]

Culture medium growth

[Ref.: #7419]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7419]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7419]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #7419]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7419]	Sample type/isolated from	low-salt, sulfide- and sulfur-rich spring
[Ref.: #7419]	Geographic location (country and/or sea, region)	south-western Oklahoma, Zodletone Spring
[Ref.: #7419]	Country	USA
[Ref.: #7419]	Country ISO 3 Code	USA
[Ref.: #7419]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Low-salt, sulfide- and sulfur-rich spring (Zodletone Spring)
[Ref.: #67770]	Geographic location (country and/or sea, region)	south-west Oklahoma
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Spring
#Condition	#Sulfuric	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7419]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7419]	Haladaptatus paucihalophilus strain DX253 16S ribosomal RNA gene, partial sequence	DQ344973	1352	ENA	797209 tax ID
[Ref.: #7419]	Haladaptatus paucihalophilus strain DX253 16S ribosomal RNA gene, partial sequence	DQ344974	1262	ENA	797209 tax ID
[Ref.: #20218]	Haladaptatus paucihalophilus gene for 16S rRNA, complete sequence, strain: JCM 13897	AB663347	1473	ENA	797209 tax ID	*
[Ref.: #20218]	Haladaptatus paucihalophilus gene for 16S ribosomal RNA, partial sequence, strain: JCM 13897	AB477986	1433	ENA	797209 tax ID	*
[Ref.: #20218]	Haladaptatus paucihalophilus DX253 strain JCM 13897 16S ribosomal RNA gene, partial sequence	HM159609	1473	ENA	797209 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Haladaptatus paucihalophilus DX253	GCA_000376445	contig	GenBank	797209 tax ID
[Ref.: #66792]	Haladaptatus paucihalophilus DX253	797209.40	wgs	PATRIC	797209 tax ID	*
[Ref.: #66792]	Haladaptatus paucihalophilus DX253	GCA_000187225	contig	GenBank	797209 tax ID	*
[Ref.: #66792]	Haladaptatus paucihalophilus DSM 18195	2698536698	draft	JGI IMG/M	797209 tax ID	*
[Ref.: #66792]	Haladaptatus paucihalophilus DX253	649989953	draft	JGI IMG/M	797209 tax ID	*
[Ref.: #66792]	Haladaptatus paucihalophilus DX253	2516653072	draft	JGI IMG/M	797209 tax ID	*

[Ref.: #7419]

GC-content

60.5 mol%

Availability in culture collections External links

[Ref.: #7419]

Culture collection no.

DSM 18195, ATCC BAA-1313, JCM 13897, KCTC 4006, CGMCC 1.8953

[Ref.: #75460]

SI-ID 297215

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haladaptatus pallidirubidus sp. nov., a halophilic archaeon isolated from saline soil samples in Yunnan and Xinjiang, China.	Liu BB, Zhao WY, Chu X, Hozzein WN, Prabhu DM, Wadaan MA, Tang SK, Zhang LL, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0259-4	2014	*
Phylogeny	Haladaptatus cibarius sp. nov., an extremely halophilic archaeon from seafood, and emended description of the genus Haladaptatus.	Roh SW, Lee ML, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.013037-0	2009	*
Phylogeny	Haladaptatus litoreus sp. nov., an extremely halophilic archaeon from a marine solar saltern, and emended description of the genus Haladaptatus.	Cui HL, Sun FF, Gao X, Dong Y, Xu XW, Zhou YG, Liu HC, Oren A, Zhou PJ	Int J Syst Evol Microbiol	10.1099/ijs.0.015933-0	2009	*
Phylogeny	Haladaptatus paucihalophilus gen. nov., sp. nov., a halophilic archaeon isolated from a low-salt, sulfide-rich spring.	Savage KN, Krumholz LR, Oren A, Elshahed MS	Int J Syst Evol Microbiol	10.1099/ijs.0.64464-0	2007	*

References

#7419

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18195

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#75460

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297215.1 )

* These data were automatically processed and therefore are not curated

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