Halostagnicola kamekurae (DSM 22427, 194-10, CECT 7536)

Name: Halostagnicola kamekurae (DSM 22427, 194-10, CECT 7536)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5970

Type strain

Strain Designation 194-10

Culture col. no. DSM 22427 194-10 CECT 7536 JCM 16110

NCBI tax ID(s) 619731

Special Collections DSMZ JCM Literature strains

History DSMZ <- H. Minegishi, Bio-Nano Electronics Res. Centre, Toyo Univ., Kawagoe, Japan; 194-10 JCM <-- H. Minegishi 194-10.

Links

Halostagnicola kamekurae 194-10 is an aerobe, spore-forming, Gram-negative archaeon that was isolated from solar salt.

spore-forming Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 374235

CECT 7536,DSM 22427,JCM 16110

@ref 20215

Last LPSN update 2026-05-29 08:26:17

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Natrialbaceae

Genus Halostagnicola

Species Halostagnicola kamekurae

Full scientific name Halostagnicola kamekurae Nagaoka et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29502	negative	2-2.5 µm	0.8-1 µm	rod-shaped

Pigmentation

29502

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16329	HALOBACTERIA MEDIUM (DSMZ Medium 372)		Medium recipe at MediaDive	Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16329	positive	growth	37
29502	positive	growth	20-45
29502	positive	optimum	30
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
29502	positive	optimum	6.5-7
29502	positive	growth	06-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29502	aerobe
125439	aerobe	92.669

Spore formation

@ref	Spore formation	Confidence
29502
125439		94.885

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29502	NaCl	positive	growth	10-30 %
29502	NaCl	positive	optimum	15 %

Observation

29502

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29502	30089 ChEBI	acetate	+	carbon source
29502	22599 ChEBI	arabinose	+	carbon source
29502	28260 ChEBI	galactose	+	carbon source
29502	17234 ChEBI	glucose	+	carbon source
29502	29987 ChEBI	glutamate	+	carbon source
29502	17754 ChEBI	glycerol	+	carbon source
29502	17716 ChEBI	lactose	+	carbon source
29502	25115 ChEBI	malate	+	carbon source
29502	17306 ChEBI	maltose	+	carbon source
29502	37684 ChEBI	mannose	+	carbon source
29502	17632 ChEBI	nitrate	+	reduction
29502	17272 ChEBI	propionate	+	carbon source
29502	16634 ChEBI	raffinose	+	carbon source
29502	27082 ChEBI	trehalose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
29502	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
29502	35581 ChEBI	indole	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Condition	#Saline

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16329	solar salt	isolated in Japan from solar salt imported from the Philippines	Philippines	PHL	Asia
67770	Solar saltern sample imported into Japan from the Philippines

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16329	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2639762563 annotated assembly for Halostagnicola kamekurae DSM 22427	contig	GCA_900116205	619731.3	2639762563	619731	75.93

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16329	Halostagnicola kamekurae gene for 16S ribosomal RNA, partial sequence	AB489220	1433		619731
124043	Halostagnicola kamekurae gene for 16S rRNA, complete sequence, strain: JCM 16110.	AB663440	1473		619731

GC content

@ref	GC-content (mol%)	Method
16329	59.8
67770	59.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2639762563 annotated assembly for Halostagnicola kamekurae DSM 22427
NCBI: GCA_900116205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	92.67	no
125439	gram_stain	BacteriaNetⓘ	negative	80.44	no
125439	motility	BacteriaNetⓘ	no	62.41	no
125439	spore_formation	BacteriaNetⓘ	no	94.89	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Bacterial-like nitric oxide synthase in the haloalkaliphilic archaeon Natronomonas pharaonis.	Orsini SS, James KL, Reyes DJ, Couto-Rodriguez RL, Gulko MK, Witte A, Carroll RK, Rice KC.	Microbiologyopen	10.1002/mbo3.1124	2020
Phylogeny	Halostagnicola bangensis sp. nov., an alkaliphilic haloarchaeon from a soda lake.	Corral P, Corcelli A, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.000006	2014
Phylogeny	Halostagnicola alkaliphila sp. nov., an alkaliphilic haloarchaeon from commercial rock salt.	Nagaoka S, Minegishi H, Echigo A, Shimane Y, Kamekura M, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.023119-0	2010
Phylogeny	Halostagnicola kamekurae sp. nov., an extremely halophilic archaeon from solar salt.	Nagaoka S, Minegishi H, Echigo A, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.014449-0	2010

References

#16329	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22427
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25902	IJSEM 2828 2010 ( DOI 10.1099/ijs.0.014449-0 , PubMed 20081018 )
#29502	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25902
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Halostagnicola kamekurae (DSM 22427, 194-10, CECT 7536)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900116205

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media