Halalkalicoccus jeotgali B3 is an aerobe archaeon that was isolated from salted shrimp jeotgal .
aerobe genome sequence 16S sequence Archaea| @ref 20215 |
|
|
| Domain Archaea |
| Phylum Methanobacteriota |
| Class Halobacteria |
| Order Halobacteriales |
| Family Halalkalicoccaceae |
| Genus Halalkalicoccus |
| Species Halalkalicoccus jeotgali |
| Full scientific name Halalkalicoccus jeotgali Roh et al. 2007 |
| @ref: | 66793 |
| multimedia content: | EM_DSM_18796_1.jpg |
| multimedia.multimedia content: | EM_DSM_18796_1.jpg |
| caption: | electron microscopic image |
| intellectual property rights: | © HZI/Manfred Rohde |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 7702 | MEDIUM FOR H. DOMBROWSKII (DSMZ Medium 954) | Medium recipe at MediaDive | Name: MEDIUM FOR H. DOMBROWSKII (DSMZ Medium 954) Composition: NaCl 200.0 g/l MgCl2 x 6 H2O 20.0 g/l Agar 20.0 g/l Tris 12.1 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l KCl 2.0 g/l CaCl2 x 2 H2O 0.2 g/l Distilled water |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 97.157 |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | enterobactin biosynthesis | 100 | 3 of 3 | ||
| 66794 | gluconeogenesis | 100 | 8 of 8 | ||
| 66794 | molybdenum cofactor biosynthesis | 100 | 9 of 9 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | phenylacetate degradation (aerobic) | 100 | 5 of 5 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | ethanol fermentation | 100 | 2 of 2 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | ||
| 66794 | flavin biosynthesis | 93.33 | 14 of 15 | ||
| 66794 | threonine metabolism | 90 | 9 of 10 | ||
| 66794 | aspartate and asparagine metabolism | 88.89 | 8 of 9 | ||
| 66794 | valine metabolism | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | ketogluconate metabolism | 87.5 | 7 of 8 | ||
| 66794 | isoleucine metabolism | 87.5 | 7 of 8 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | palmitate biosynthesis | 86.36 | 19 of 22 | ||
| 66794 | ubiquinone biosynthesis | 85.71 | 6 of 7 | ||
| 66794 | leucine metabolism | 84.62 | 11 of 13 | ||
| 66794 | phenylalanine metabolism | 84.62 | 11 of 13 | ||
| 66794 | pantothenate biosynthesis | 83.33 | 5 of 6 | ||
| 66794 | glutamate and glutamine metabolism | 82.14 | 23 of 28 | ||
| 66794 | propionate fermentation | 80 | 8 of 10 | ||
| 66794 | factor 420 biosynthesis | 80 | 4 of 5 | ||
| 66794 | gallate degradation | 80 | 4 of 5 | ||
| 66794 | ethylmalonyl-CoA pathway | 80 | 4 of 5 | ||
| 66794 | Entner Doudoroff pathway | 80 | 8 of 10 | ||
| 66794 | glycogen metabolism | 80 | 4 of 5 | ||
| 66794 | purine metabolism | 78.72 | 74 of 94 | ||
| 66794 | citric acid cycle | 78.57 | 11 of 14 | ||
| 66794 | CO2 fixation in Crenarchaeota | 77.78 | 7 of 9 | ||
| 66794 | pyrimidine metabolism | 77.78 | 35 of 45 | ||
| 66794 | d-mannose degradation | 77.78 | 7 of 9 | ||
| 66794 | allantoin degradation | 77.78 | 7 of 9 | ||
| 66794 | urea cycle | 76.92 | 10 of 13 | ||
| 66794 | toluene degradation | 75 | 3 of 4 | ||
| 66794 | phenol degradation | 75 | 15 of 20 | ||
| 66794 | acetate fermentation | 75 | 3 of 4 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 75 | 6 of 8 | ||
| 66794 | non-pathway related | 73.68 | 28 of 38 | ||
| 66794 | alanine metabolism | 72.41 | 21 of 29 | ||
| 66794 | glutathione metabolism | 71.43 | 10 of 14 | ||
| 66794 | propanol degradation | 71.43 | 5 of 7 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | reductive acetyl coenzyme A pathway | 71.43 | 5 of 7 | ||
| 66794 | vitamin B1 metabolism | 69.23 | 9 of 13 | ||
| 66794 | lipid metabolism | 67.74 | 21 of 31 | ||
| 66794 | serine metabolism | 66.67 | 6 of 9 | ||
| 66794 | cyanate degradation | 66.67 | 2 of 3 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | cysteine metabolism | 66.67 | 12 of 18 | ||
| 66794 | lipid A biosynthesis | 66.67 | 6 of 9 | ||
| 66794 | glycolate and glyoxylate degradation | 66.67 | 4 of 6 | ||
| 66794 | arginine metabolism | 66.67 | 16 of 24 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | methionine metabolism | 65.38 | 17 of 26 | ||
| 66794 | glycolysis | 64.71 | 11 of 17 | ||
| 66794 | heme metabolism | 64.29 | 9 of 14 | ||
| 66794 | photosynthesis | 64.29 | 9 of 14 | ||
| 66794 | tetrahydrofolate metabolism | 64.29 | 9 of 14 | ||
| 66794 | pentose phosphate pathway | 63.64 | 7 of 11 | ||
| 66794 | tryptophan metabolism | 63.16 | 24 of 38 | ||
| 66794 | NAD metabolism | 61.11 | 11 of 18 | ||
| 66794 | creatinine degradation | 60 | 3 of 5 | ||
| 66794 | 3-chlorocatechol degradation | 60 | 3 of 5 | ||
| 66794 | cellulose degradation | 60 | 3 of 5 | ||
| 66794 | carotenoid biosynthesis | 59.09 | 13 of 22 | ||
| 66794 | lysine metabolism | 57.14 | 24 of 42 | ||
| 66794 | degradation of sugar alcohols | 56.25 | 9 of 16 | ||
| 66794 | degradation of sugar acids | 56 | 14 of 25 | ||
| 66794 | histidine metabolism | 55.17 | 16 of 29 | ||
| 66794 | metabolism of disaccharids | 54.55 | 6 of 11 | ||
| 66794 | proline metabolism | 54.55 | 6 of 11 | ||
| 66794 | vitamin B6 metabolism | 54.55 | 6 of 11 | ||
| 66794 | sulfate reduction | 53.85 | 7 of 13 | ||
| 66794 | oxidative phosphorylation | 52.75 | 48 of 91 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 50 | 1 of 2 | ||
| 66794 | tyrosine metabolism | 50 | 7 of 14 | ||
| 66794 | cis-vaccenate biosynthesis | 50 | 1 of 2 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 50 | 5 of 10 | ||
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | myo-inositol biosynthesis | 50 | 5 of 10 | ||
| 66794 | CMP-KDO biosynthesis | 50 | 2 of 4 | ||
| 66794 | dTDPLrhamnose biosynthesis | 50 | 4 of 8 | ||
| 66794 | vitamin E metabolism | 50 | 2 of 4 | ||
| 66794 | lactate fermentation | 50 | 2 of 4 | ||
| 66794 | cyclohexanol degradation | 50 | 2 of 4 | ||
| 66794 | phenylmercury acetate degradation | 50 | 1 of 2 | ||
| 66794 | kanosamine biosynthesis II | 50 | 1 of 2 | ||
| 66794 | selenocysteine biosynthesis | 50 | 3 of 6 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 50 | 6 of 12 | ||
| 66794 | peptidoglycan biosynthesis | 46.67 | 7 of 15 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 46.15 | 6 of 13 | ||
| 66794 | arachidonic acid metabolism | 44.44 | 8 of 18 | ||
| 66794 | nitrate assimilation | 44.44 | 4 of 9 | ||
| 66794 | 4-hydroxymandelate degradation | 44.44 | 4 of 9 | ||
| 66794 | androgen and estrogen metabolism | 43.75 | 7 of 16 | ||
| 66794 | degradation of pentoses | 42.86 | 12 of 28 | ||
| 66794 | aclacinomycin biosynthesis | 42.86 | 3 of 7 | ||
| 66794 | mevalonate metabolism | 42.86 | 3 of 7 | ||
| 66794 | methanogenesis from CO2 | 41.67 | 5 of 12 | ||
| 66794 | vitamin B12 metabolism | 41.18 | 14 of 34 | ||
| 66794 | lipoate biosynthesis | 40 | 2 of 5 | ||
| 66794 | coenzyme M biosynthesis | 40 | 4 of 10 | ||
| 66794 | 3-phenylpropionate degradation | 40 | 6 of 15 | ||
| 66794 | bacilysin biosynthesis | 40 | 2 of 5 | ||
| 66794 | hydrogen production | 40 | 2 of 5 | ||
| 66794 | polyamine pathway | 39.13 | 9 of 23 | ||
| 66794 | phenylpropanoid biosynthesis | 38.46 | 5 of 13 | ||
| 66794 | cholesterol biosynthesis | 36.36 | 4 of 11 | ||
| 66794 | methane metabolism | 33.33 | 1 of 3 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | sulfoquinovose degradation | 33.33 | 1 of 3 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | degradation of hexoses | 33.33 | 6 of 18 | ||
| 66794 | ascorbate metabolism | 31.82 | 7 of 22 | ||
| 66794 | isoprenoid biosynthesis | 30.77 | 8 of 26 | ||
| 66794 | chlorophyll metabolism | 27.78 | 5 of 18 | ||
| 66794 | d-xylose degradation | 27.27 | 3 of 11 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | butanoate fermentation | 25 | 1 of 4 | ||
| 66794 | catecholamine biosynthesis | 25 | 1 of 4 | ||
| 66794 | biotin biosynthesis | 25 | 1 of 4 | ||
| 66794 | sulfopterin metabolism | 25 | 1 of 4 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM19689v1 assembly for Halalkalicoccus jeotgali B3 | complete | 795797 | 96.21 | ||||
| 66792 | ASM48553v1 assembly for Halalkalicoccus jeotgali B3 | scaffold | 795797 | 70.46 | ||||
| 67770 | ASM33725v1 assembly for Halalkalicoccus jeotgali B3 | contig | 795797 | 66.48 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Halalkalicoccus jeotgali gene for 16S ribosomal RNA, partial sequence, strain: JCM 14584 | AB477223 | 1434 | 795797 | ||
| 20218 | Halalkalicoccus jeotgali gene for 16S ribosomal RNA, partial sequence, strain: JCM 14584 | AB486003 | 1434 | 795797 | ||
| 20218 | Halalkalicoccus jeotgali gene for 16S rRNA, complete sequence, strain: JCM 14584 | AB663348 | 1474 | 795797 | ||
| 7702 | Halalkalicoccus jeotgali B3 16S ribosomal RNA gene, partial sequence | EF077632 | 1330 | 795797 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 94.26 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 85.86 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 41.99 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 97.16 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 77.19 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 79.06 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 80.98 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 84.38 | no |
| 125438 | thermophilic | thermophileⓘ | no | 83.29 | no |
| 125438 | flagellated | motile2+ⓘ | no | 87.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
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| Metabolism | Computational comparative study of tuberculosis proteomes using a model learned from signal peptide structures. | Lai JS, Cheng CW, Sung TY, Hsu WL. | PLoS One | 10.1371/journal.pone.0035018 | 2012 | |
| Effect of loop-grafting on the activity, stability and regioselectivity of Priestia megaterium levansucrase using two inulosucrases as loop donors. | Ortiz-Soto ME, Schmid K, Weber C, Gross M, Seibel J. | Int J Biol Macromol | 10.1016/j.ijbiomac.2025.141584 | 2025 | ||
| Surface-enhanced Raman spectroscopy for identification of food processing bacteria. | Kashif M, Majeed MI, Nawaz H, Rashid N, Abubakar M, Ahmad S, Ali S, Hyat H, Bashir S, Batool F, Akbar S, Anwar MA. | Spectrochim Acta A Mol Biomol Spectrosc | 10.1016/j.saa.2021.119989 | 2021 | ||
| Unveiling the repressive mechanism of a PPS-like regulator (PspR) in polyhydroxyalkanoates biosynthesis network. | Chen J, Cui Y, Zhang S, Wu B, Han J, Xiang H. | Appl Microbiol Biotechnol | 10.1007/s00253-024-13100-x | 2024 | ||
| Genetics | Microbial diversity analysis of Chumathang geothermal spring, Ladakh, India. | Anu K, Kumari S, Choudhary G, Devi S. | Braz J Microbiol | 10.1007/s42770-024-01284-3 | 2024 | |
| Genetics | Metagenomics insight into Puga geothermal geyser located in Himalayan Geothermal Belt (Trans-Himalayan Plateau) Ladakh, India. | Kumari S, Choudhary G, Anu K, Devi S. | Braz J Microbiol | 10.1007/s42770-024-01408-9 | 2024 | |
| Genetics | Unveiling the Biodiversity of Hyperthermophilic Archaea in Jharia Coal Mines: Potential Threat to Methanogenesis? | Jha P, Singh J, Vidyarthi AS, Prasad R. | Curr Genomics | 10.2174/1389202921999200605151722 | 2020 | |
| Proteome | New insight in the structural features of haloadaptation in alpha-amylases from halophilic Archaea following homology modeling strategy: folded and stable conformation maintained through low hydrophobicity and highly negative charged surface. | Zorgani MA, Patron K, Desvaux M. | J Comput Aided Mol Des | 10.1007/s10822-014-9754-y | 2014 | |
| Functional and Molecular Characterization of the Halomicrobium sp. IBSBa Inulosucrase. | Abaramak G, Porras-Dominguez JR, Janse van Rensburg HC, Lescrinier E, Toksoy Oner E, Kirtel O, Van den Ende W. | Microorganisms | 10.3390/microorganisms9040749 | 2021 | ||
| Phylogeny | Phylogenetic analysis of the archaeal community in an alkaline-saline soil of the former lake Texcoco (Mexico). | Valenzuela-Encinas C, Neria-Gonzalez I, Alcantara-Hernandez RJ, Enriquez-Aragon JA, Estrada-Alvarado I, Hernandez-Rodriguez C, Dendooven L, Marsch R. | Extremophiles | 10.1007/s00792-007-0121-y | 2008 | |
| Evolutionary and Functional Relationships of the dha Regulon by Genomic Context Analysis. | Martins-Pinheiro M, Lima WC, Asif H, Oller CA, Menck CF. | PLoS One | 10.1371/journal.pone.0150772 | 2016 | ||
| Transcriptome | Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux. | Lynch EA, Langille MG, Darling A, Wilbanks EG, Haltiner C, Shao KS, Starr MO, Teiling C, Harkins TT, Edwards RA, Eisen JA, Facciotti MT. | PLoS One | 10.1371/journal.pone.0041389 | 2012 | |
| Metabolism | Phylogenomic Analysis of beta-Lactamase in Archaea and Bacteria Enables the Identification of Putative New Members. | Keshri V, Panda A, Levasseur A, Rolain JM, Pontarotti P, Raoult D. | Genome Biol Evol | 10.1093/gbe/evy028 | 2018 | |
| Metabolism | The core and unique proteins of haloarchaea. | Capes MD, DasSarma P, DasSarma S. | BMC Genomics | 10.1186/1471-2164-13-39 | 2012 | |
| Metabolism | Fructose degradation in the haloarchaeon Haloferax volcanii involves a bacterial type phosphoenolpyruvate-dependent phosphotransferase system, fructose-1-phosphate kinase, and class II fructose-1,6-bisphosphate aldolase. | Pickl A, Johnsen U, Schonheit P. | J Bacteriol | 10.1128/jb.00200-12 | 2012 | |
| Metabolism | Trehalose/2-sulfotrehalose biosynthesis and glycine-betaine uptake are widely spread mechanisms for osmoadaptation in the Halobacteriales. | Youssef NH, Savage-Ashlock KN, McCully AL, Luedtke B, Shaw EI, Hoff WD, Elshahed MS. | ISME J | 10.1038/ismej.2013.165 | 2014 | |
| Phylogeny | Microbial biogeography of a university campus. | Ross AA, Neufeld JD. | Microbiome | 10.1186/s40168-015-0135-0 | 2015 | |
| Metabolism | Thermophilic and halophilic beta-agarase from a halophilic archaeon Halococcus sp. 197A. | Minegishi H, Shimane Y, Echigo A, Ohta Y, Hatada Y, Kamekura M, Maruyama T, Usami R. | Extremophiles | 10.1007/s00792-013-0575-z | 2013 | |
| Genetics | Deconstruction of archaeal genome depict strategic consensus in core pathways coding sequence assembly. | Pal A, Banerjee R, Mondal UK, Mukhopadhyay S, Bothra AK. | PLoS One | 10.1371/journal.pone.0118245 | 2015 | |
| Metabolism | Comparative genomic analysis of evolutionarily conserved but functionally uncharacterized membrane proteins in archaea: Prediction of novel components of secretion, membrane remodeling and glycosylation systems. | Makarova KS, Galperin MY, Koonin EV. | Biochimie | 10.1016/j.biochi.2015.01.004 | 2015 | |
| Metabolism | Identification of the haloarchaeal phasin (PhaP) that functions in polyhydroxyalkanoate accumulation and granule formation in Haloferax mediterranei. | Cai S, Cai L, Liu H, Liu X, Han J, Zhou J, Xiang H. | Appl Environ Microbiol | 10.1128/aem.07114-11 | 2012 | |
| Phylogeny | New approach for phylogenetic tree recovery based on genome-scale metabolic networks. | Gamermann D, Montagud A, Conejero JA, Urchueguia JF, de Cordoba PF. | J Comput Biol | 10.1089/cmb.2013.0150 | 2014 | |
| Seasonally variable intestinal metagenomes of the red palm weevil (Rhynchophorus ferrugineus). | Jia S, Zhang X, Zhang G, Yin A, Zhang S, Li F, Wang L, Zhao D, Yun Q, Tala, Wang J, Sun G, Baabdullah M, Yu X, Hu S, Al-Mssallem IS, Yu J. | Environ Microbiol | 10.1111/1462-2920.12262 | 2013 | ||
| Proteome | Charge segregation and low hydrophobicity are key features of ribosomal proteins from different organisms. | Fedyukina DV, Jennaro TS, Cavagnero S. | J Biol Chem | 10.1074/jbc.m113.507707 | 2014 | |
| Metabolism | Analysis of the transcriptional regulator GlpR, promoter elements, and posttranscriptional processing involved in fructose-induced activation of the phosphoenolpyruvate-dependent sugar phosphotransferase system in Haloferax mediterranei. | Cai L, Cai S, Zhao D, Wu J, Wang L, Liu X, Li M, Hou J, Zhou J, Liu J, Han J, Xiang H. | Appl Environ Microbiol | 10.1128/aem.03372-13 | 2014 | |
| Enzymology | Phylogeny of Rieske/cytb complexes with a special focus on the Haloarchaeal enzymes. | Baymann F, Schoepp-Cothenet B, Lebrun E, van Lis R, Nitschke W. | Genome Biol Evol | 10.1093/gbe/evs056 | 2012 | |
| Enzymology | Halalkalicoccus subterraneus sp. nov., an extremely halophilic archaeon isolated from a subterranean halite deposit. | Chen S, Xu Y, Sun S, Chen F, Liu J. | Antonie Van Leeuwenhoek | 10.1007/s10482-019-01241-3 | 2019 | |
| Phylogeny | Halalkalicoccus jeotgali sp. nov., a halophilic archaeon from shrimp jeotgal, a traditional Korean fermented seafood. | Roh SW, Nam YD, Chang HW, Sung Y, Kim KH, Oh HM, Bae JW | Int J Syst Evol Microbiol | 10.1099/ijs.0.65121-0 | 2007 |
| #7702 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18796 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66793 | Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 ) |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #67771 | Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC; |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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