Name: Halorubrum aquaticum EN-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5959

Type strain:

Species: Halorubrum aquaticum

Strain Designation: EN-2

Culture col. no.: DSM 18322, CECT 7174, CGMCC 1.6377, JCM 14031

Strain history: A. Ventosa EN-2.

NCBI tax ID(s): 387340 (species)

SI-ID 365771

CECT 7174, CGMCC 1.6377, JCM 14031, DSM 18322

Section

Halorubrum aquaticum EN-2 is a mesophilic archaeon that was isolated from saline lake.

mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Halorubraceae*
	Genus	*Halorubrum*
	Species	**Halorubrum aquaticum**
	Full Scientific Name (LPSN)	Halorubrum aquaticum Gutiérrez et al. 2011

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7504]

Culture medium

28% MH MEDIUM (DSMZ Medium 1460)

[Ref.: #7504]

Culture medium growth

[Ref.: #7504]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7504]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7504]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #7504]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7504]	Sample type/isolated from	saline lake
[Ref.: #7504]	Geographic location (country and/or sea, region)	Inner Mongolia, Lake Erliannor (43° 44' N 112° 02' E)
[Ref.: #7504]	Country	China
[Ref.: #7504]	Country ISO 3 Code	CHN
[Ref.: #7504]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Saline lake Erliannor in Inner Mongolia
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM268115 (>99% sequence identity) for Halorubrum aquaticum from Microbeatlas

Aquatic Samples	5
Soil Samples
Animal Samples
Plant Samples
Total Samples	5

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7504]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7504]	Halorubrum aquaticum 16S rRNA gene, strain EN-2	AM268115	1420	ENA	387340 tax ID
[Ref.: #20218]	Halorubrum aquaticum gene for 16S rRNA, complete sequence, strain: JCM 14031	AB663404	1471	ENA	387340 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halorubrum aquaticum CGMCC 1.6377	GCA_900113615	contig	GenBank	387340 tax ID	*
[Ref.: #66792]	Halorubrum aquaticum CGMCC 1.6377	2617270873	draft	JGI IMG/M	387340 tax ID	*
[Ref.: #66792]	Halorubrum aquaticum strain CGMCC 1.6377	387340.3	wgs	PATRIC	387340 tax ID	*

[Ref.: #7504]

GC-content

62.1 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #7504]

Culture collection no.

DSM 18322, CECT 7174, CGMCC 1.6377, JCM 14031

[Ref.: #75448]

SI-ID 365771

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halorubrum aethiopicum sp. nov., an extremely halophilic archaeon isolated from commercial rock salt.	Gibtan A, Song HS, Kim JY, Kim YB, Park N, Park K, Lee SJ, Kwon J, Roh SW, Lee HS	Int J Syst Evol Microbiol	10.1099/ijsem.0.002525	2017	*
Phylogeny	Halorubrum rubrum sp. nov., an extremely halophilic archaeon from a Chinese salt lake.	Qiu XX, Zhao ML, Han D, Zhang WJ, Cui HL	Antonie Van Leeuwenhoek	10.1007/s10482-013-0002-6	2013	*
Phylogeny	Halorubrum aquaticum sp. nov., an archaeon isolated from hypersaline lakes.	Gutierrez MC, Castillo AM, Corral P, Kamekura M, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.025015-0	2010	*

References

#7504

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18322

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75448

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID365771.1 )

* These data were automatically processed and therefore are not curated

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